Skip to main content

Table 1 Probe Design

From: Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)

Group Name Sub groupsa Sequencesb Ac Bc Cc
actinomycetes 9 987 9 5 2
bacilli. 7 281 4 3 1
clostridia 2 284 2 1 0
cyanobacteria 9 223 10 6 3
myxobacteria 2 69 9 9 1
pseudomonads 9 270 20 17 4
  1. a Number of subgroups alignments performed before generating a group-specific consensus b Number of sequences considered for generating the combined subgroups alignments c Number of valid probe pairs after the first (column A), second (B) or third (C) selection step. See text for details