Genes up-regulated at pHÂ 8.0 compared to 6.8 | ||||
---|---|---|---|---|
Iron uptake genes | ||||
Gene | Log2fold | p -value | FDR | Comment |
hitA | 1.76 | 9.65×10-12 | 2.46×10-9 | Iron uptake ABC, periplasmic domain |
hitB | 1.31 | 8.77×10-7 | 1.11×10-4 | Iron uptake ABC, permease domain |
tbp2 | 1.54 | 2.92×10-5 | 2.74×10-3 | Iron-binding OM receptor |
tbp1 | 1.49 | 3.53×10-7 | 5.26×10-5 | Transferrin binding protein |
h×uB | 1.02 | 8.62×10-5 | 7.32×10-3 | Heme-hemopexin utilization protein |
Metabolic genes | ||||
Gene | Log 2 fold | p -value | FDR | Comment |
glpB | 1.08 | 5.35×10-5 | 4.77×10-3 | Glycerol metabolism |
Genes of unknown function | ||||
Gene | Log 2 fold | p -value | FDR | Comment |
HI0997 | 1.34 | 8.95×10-4 | 5.51×10-2 | Hypothetical protein |
HI1427 | 1.31 | 4.17×10-7 | 5.72×10-5 | Transmembrane protein |
Genes down-regulated at pHÂ 8.0 compared to 6.8 | ||||
Gene | Log 2 fold | p -value | FDR | Comment |
HI1349 | -1.23 | 5.14×10-6 | 5.10×10-4 | Ferritin |
ahpD | -1.72 | 1.24×10-7 | 2.01×10-5 | Stress response |