From: Single nucleotide polymorphism (SNP) analysis used for the phylogeny of the Mycobacterium tuberculosis complex based on a pyrosequencing assay
SCG
Family
T
U
No SIT
Total
T1
T2
T4-CEU1
T5
T5-MAD2
U (LAM3)
3b
Haarlem
1
7
8
No Haarlem
2
4
BOVIS
5
LAM
3
9
No LAM
6a
“Authentic” T
14
6c
New pattern
18
40