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Table 5 Phylogenetic distribution of the T, U and with no SIT isolates according to their SCG

From: Single nucleotide polymorphism (SNP) analysis used for the phylogeny of the Mycobacterium tuberculosis complex based on a pyrosequencing assay

SCG

Family

T

U

No SIT

Total

T1

T2

T4-CEU1

T5

T5-MAD2

U

U (LAM3)

3b

Haarlem

     

1

 

7

8

No Haarlem

1

 

1

    

2

4

7

BOVIS

       

1

1

5

LAM

1

    

3

2

3

9

No LAM

1

      

1

2

6a

“Authentic” T

5

1

 

1

1

2

 

4

14

6c

New pattern

1

    

1

  

2

Total

 

9

1

1

1

1

7

2

18

40