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Table 1 Description of the 173 isolates of 2010 in Aragon analysed in this study

From: Single nucleotide polymorphism (SNP) analysis used for the phylogeny of the Mycobacterium tuberculosis complex based on a pyrosequencing assay

Family based on SpolDB4

Isolates genotyped by IS 6110-RFLP and spoligotyping (N = 173)

Isolates studied by SNPs and classified on SCG (N = 101)

Isolates selected based on their different spoligotypes (N = 75)

AFRICANUM

AFRI_1

1

1 (0.57%)

1

1 (0.99%)

1

1 (1.33%)

BEIJING

BEIJING

1

1 (0.57%)

1

1 (0.99%)

1

1 (1.33%)

BOVIS

BOVIS1

1

3 (1.7%)

1

3 (2.97%)

1

2 (2.66%)

BOVIS1_BCG

2

2

1

CAS

CAS

2

2 (1.25%)

1

1 (0.99%)

1

1 (1.33%)

EAI

EAI7_BGD2

1

1 (0.57%)

1

1 (0.99%)

1

1 (1.33%)

HAARLEM

H1

15

41 (23.6%)

7

25 (24.75%)

6

15 (20%)

H2

6

2

1

H3

19

15

7

H3-T3

1

1

1

LAM

LAM1

1

24 (13.8%)

1

17 (16.83%)

1

10 (13.33%)

LAM10_CAM

2

1

1

LAM12_MAD1

2

1

1

LAM2

2

2

1

LAM3

5

5

1

LAM9

12

7

5

S

S

4

4 (2.31%)

3

3 (2.97%)

2

2 (2.66%)

X

X1

3

5 (1.15%)

1

2 (1.98%)

1

2 (2.66%)

X2

2

1

1

T

T1

27

34 (19.6%)

12

16 (15.84%)

9

13 (17.33%)

T2

2

1

1

T4_CEU1

2

1

1

T5

1

1

1

T5_MAD2

2

1

1

U

U

24

26 (15.0%)

10

12 (11.88%)

7

9 (12.00%)

U (LAM3?)

2

2

2

No family

NO SIT

31

31 (17.9%)

19

19 (18.81%)

18

18 (24.00%)