Family based on SpolDB4 | Isolates genotyped by IS 6110-RFLP and spoligotyping (N = 173) | Isolates studied by SNPs and classified on SCG (N = 101) | Isolates selected based on their different spoligotypes (N = 75) | ||||
---|---|---|---|---|---|---|---|
AFRICANUM | AFRI_1 | 1 | 1 (0.57%) | 1 | 1 (0.99%) | 1 | 1 (1.33%) |
BEIJING | BEIJING | 1 | 1 (0.57%) | 1 | 1 (0.99%) | 1 | 1 (1.33%) |
BOVIS | BOVIS1 | 1 | 3 (1.7%) | 1 | 3 (2.97%) | 1 | 2 (2.66%) |
BOVIS1_BCG | 2 | 2 | 1 | ||||
CAS | CAS | 2 | 2 (1.25%) | 1 | 1 (0.99%) | 1 | 1 (1.33%) |
EAI | EAI7_BGD2 | 1 | 1 (0.57%) | 1 | 1 (0.99%) | 1 | 1 (1.33%) |
HAARLEM | H1 | 15 | 41 (23.6%) | 7 | 25 (24.75%) | 6 | 15 (20%) |
H2 | 6 | 2 | 1 | ||||
H3 | 19 | 15 | 7 | ||||
H3-T3 | 1 | 1 | 1 | ||||
LAM | LAM1 | 1 | 24 (13.8%) | 1 | 17 (16.83%) | 1 | 10 (13.33%) |
LAM10_CAM | 2 | 1 | 1 | ||||
LAM12_MAD1 | 2 | 1 | 1 | ||||
LAM2 | 2 | 2 | 1 | ||||
LAM3 | 5 | 5 | 1 | ||||
LAM9 | 12 | 7 | 5 | ||||
S | S | 4 | 4 (2.31%) | 3 | 3 (2.97%) | 2 | 2 (2.66%) |
X | X1 | 3 | 5 (1.15%) | 1 | 2 (1.98%) | 1 | 2 (2.66%) |
X2 | 2 | 1 | 1 | ||||
T | T1 | 27 | 34 (19.6%) | 12 | 16 (15.84%) | 9 | 13 (17.33%) |
T2 | 2 | 1 | 1 | ||||
T4_CEU1 | 2 | 1 | 1 | ||||
T5 | 1 | 1 | 1 | ||||
T5_MAD2 | 2 | 1 | 1 | ||||
U | U | 24 | 26 (15.0%) | 10 | 12 (11.88%) | 7 | 9 (12.00%) |
U (LAM3?) | 2 | 2 | 2 | ||||
No family | NO SIT | 31 | 31 (17.9%) | 19 | 19 (18.81%) | 18 | 18 (24.00%) |