Characterization, sequencing and comparative genomic analysis of vB_AbaM-IME-AB2, a novel lytic bacteriophage that infects multidrug-resistant Acinetobacter baumannii clinical isolates

Peng, Fan; Mi, Zhiqiang; Huang, Yong; Yuan, Xin; Niu, Wenkai; Wang, Yahui; Hua, Yuhui; Fan, Huahao; Bai, Changqing; Tong, Yigang

doi:10.1186/1471-2180-14-181

Table 3 Comparative genomic analysis of A. baumannii phage IME-AB2, A. baumannii phage AB1, A. baumanni i phage AP22, and A3 baumannii phage phiAC-1

From: Characterization, sequencing and comparative genomic analysis of vB_AbaM-IME-AB2, a novel lytic bacteriophage that infects multidrug-resistant Acinetobacter baumannii clinical isolates

IME-AB2 (82CDSs)	AB1 (85CDSs)	Score (bits)	E-value	phiAC-1 (82CDSs)	Score (bits)	E-value	AP22 (89CDSs)	Score (bits)	E-value
CDS.01	gp01	134	9e-35	0055	190	1e-51	gp42	290	1e-81
CDS.02	gp02	192	4e-52	0054	205	3e-56	gp41	130	9e-34
CDS.03	gp03	895	0.0	0053	645	0.0	gp40	813	0.0
CDS.04	gp04	334	5e-95	0052	207	1e-56	gp39	325	4e-92
CDS.05	gp06	345	2e-98	0051	220	1e-60	gp38	329	2e-93
CDS.06
CDS.07	gp08	57	8e-12	0050	45	3e-08	gp36	52	3e-10
CDS.08	gp09	270	7e-76	0049	99	3e-24	gp35	262	3e-73
CDS.09	gp10	150	4e-40	0048	128	2e-33	gp34	150	4e-40
CDS.10	gp12	298	3e-84	0047	221	5e-61	gp32	299	2e-84
CDS.11	gp13	74	1e-16	0046	75	6e-17	gp31	65	4e-14
CDS.12	gp15	207	2e-56	0043	208	1e-56	gp30	250	2e-69
CDS.13	gp16	120	2e-30	0042	124	1e-31	gp29	99	6e-24
CDS.14	gp17	523	e-151	0041	402	e-115	gp28	546	e-158
CDS.15
CDS.16	gp19	144	4e-38	0038	31	5e-04	gp27	36	1e-05
CDS.17
CDS.18
CDS.19
CDS.20
CDS.21	gp23	55	4e-11				gp22	71	9e-16
CDS.22
CDS.23				0022	40	1e-06	gp21	39	2e-06
CDS.24	gp27	414	e-119	0031	325	6e-92	gp18	404	e-116
CDS.25	gp28	204	4e-56
CDS.26	gp30	831	0.0	0029	658	0.0	gp17	804	0.0
CDS.27	gp31	627	0.0	0028	64	7e-13	gp16	60	8e-12
CDS.28	gp33	305	2e-86	0027	22	0.82	gp15	20	2.7
CDS.29	gp34	31	6e-04	0038	35	3e-05	gp27	32	3e-04
CDS.30	gp34	35	2e-05				gp14	30	6e-04
CDS.31	gp34	31	6e-04
CDS.32	gp35	149	1e-39				gp12	83	1e-19
CDS.33	gp36	112	1e-28				gp10	114	4e-29
CDS.34
CDS.35	gp39	133	6e-35				gp05	137	4e-36
CDS.36
CDS.37
CDS.38	gp40	147	3e-39	0010	50	1e-09	gp02	124	3e-32
CDS.39	gp42	186	1e-50	0021	152	1e-40
CDS.40							gp88	139	8e-37
CDS.41	gp43	92	3e-22
CDS.42	gp44	152	5e-40				gp87	71	1e-15
CDS.43	gp45	97	7e-24				gp86	95	2e-23
CDS.44	gp46	379	e-108				gp85	390	e-112
CDS.45	gp47	388	e-111				gp84	186	6e-50
CDS.46	gp48	68	5e-15				gp83	70	9e-16
CDS.47	gp49	72	2e-16	0019	42	2e-07	gp82	71	4e-16
CDS.48	gp50	192	1e-52
CDS.49	gp51	126	8e-33	0009	42	2e-07	gp79	159	9e-43
CDS.50	gp52	863	0.0				gp77	619	e-180
CDS.51	gp53	204	2e-55				gp76	157	2e-41
CDS.52
CDS.53	gp54	130	5e-34				gp75	133	7e-35
CDS.54
CDS.55	gp57	150	5e-40				gp72	128	3e-33
CDS.56
CDS.57	gp60	72	3e-16				gp69	74	8e-17
CDS.58	gp62	216	6e-59				gp68	295	4e-83
CDS.59	gp63	153	6e-41
CDS.60	gp64	187	9e-51				gp66	192	2e-52
CDS.61							gp65	123	8e-32
CDS.62	gp66	594	e-173
CDS.63	gp67	489	e-141				gp63	38	2e-05
CDS.64	gp68	189	2e-51				gp62	187	5e-51
CDS.65	gp70	59	2e-12				gp61	60	8e-13
CDS.66	gp71	125	5e-32
CDS.67	gp72	143	5e-38	0079	80	1e-18	gp59	128	2e-33
CDS.68
CDS.69	gp74	171	3.00E-46				gp56	174	4e-47
CDS.70	gp75	175	2e-47				gp55	174	3e-47
CDS.71	gp76	221	4e-60	0069	189	1e-50	gp54	252	1e-69
CDS.72	gp77	304	1e-85	0068	216	3e-59	gp53	313	2e-88
CDS.73	gp78	418	e-120	0067	332	3e-94	gp52	421	e-121
CDS.74	gp79	790	0.0	0066	585	e-170	gp51	796	0.0
CDS.75	gp80	213	1e-58	0065	164	4e-44	gp50	214	6e-59
CDS.76							gp49	59	2e-12
CDS.77	gp81	429	e-123	0064	200	2e-54	gp48	430	e-123
CDS.78	gp82	575	e-167	0063	437	e-125	gp47	573	e-166
CDS.79				0061	124	4e-32	gp46	170	5e-46
CDS.80	gp83	352	e-100	0060	277	1e-77	gp45	351	e-100
CDS.81	gp84	710	0.0	0057	368	e-104	gp44	715	0.0
CDS.82	gp85	77	6e-18	0056	61	6e-13	gp43	145	2e-38

IME-AB2 is the reference for alignments and comparisons to the three other strains (AB1,phiAC-1 and AP22).

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ISSN: 1471-2180

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