| | |
E. rhusiopathiae strains
|
|---|
| | |
SY1027
|
Fujisawa
|
ATCC 19414
|
|---|
|
Total genome size (bp)
| |
1752910
|
1787941
|
1750000#
|
|
GC level (%)
| |
36.36
|
36.36
|
N.A.
|
|
Predicted ORF
| |
1845 (Glimmer)
|
1780 (Genbank)
|
1717 (Genbank)
|
|
(method)
| |
1775 (PGAAP)
| | |
|
Annotated ORF (%^)
| | | | |
|
Against KEGG DB
| |
1076 (58.32)
|
1073 (60.28)
|
1080 (62.90)
|
|
Against NCBI nr DB
| |
1757 (95.23)
|
1697 (95.34)
|
1645 (95.81)
|
|
Against COG DB
| |
1209 (65.53)
|
1123 (63.09)
|
1423 (82.88)
|
|
Against ACLAME DB
| |
226 (12.25)
|
223 (12.53)
|
335 (19.51)
|
| |
plasmids
|
197 (10.68)
|
187 (10.51)
|
277 (16.13)
|
| |
phages
|
5 (0.27)
|
10 (0.56)
|
14 (0.82)
|
| |
prophages
|
24 (1.30)
|
26 (1.46)
|
44 (2.56)
|
|
Against VFDB
| |
37 (2.01)
|
27 (1.52)
|
68 (3.96)
|
|
Against ARDB
| |
7 (0.38)
|
7 (0.39)
|
14 (0.82)
|
|
Against PAIDB
| |
5 (0.27)
|
9 (0.51)
|
N.A.
|
|
Repetitive seq in bp (%*)
| |
9393 (0.54)
|
11225 (0.64)
|
N.A.
|
| |
Small RNA
|
5889 (0.34)
|
8032 (0.46)
|
N.A.
|
| |
Low complexity
|
3131 (0.18)
|
2874 (0.16)
|
N.A.
|
| |
Interspersed repeats
|
91 (0.01)
|
91 (0.01)
|
N.A.
|
- Footnotes: #denotes the approximate number according to public database; ^denotes number of genes in percentage to total number of predicted open-reading frames by Glimmer 3.02; *denotes length of sequence in percentage to total genome length; DB – abbreviation for database; seq– abbreviation for sequence; N.A. – non-applicable as strain ATCC19414 genome is only a draft assembly.
