Table 1 Summary of E. rhusiopathiae strains SY1027, Fujisawa and ATCC19414 genomes
E. rhusiopathiae strains | ||||
|---|---|---|---|---|
SY1027 | Fujisawa | ATCC 19414 | ||
Total genome size (bp) | 1752910 | 1787941 | 1750000# | |
GC level (%) | 36.36 | 36.36 | N.A. | |
Predicted ORF | 1845 (Glimmer) | 1780 (Genbank) | 1717 (Genbank) | |
(method) | 1775 (PGAAP) | |||
Annotated ORF (%^) | ||||
Against KEGG DB | 1076 (58.32) | 1073 (60.28) | 1080 (62.90) | |
Against NCBI nr DB | 1757 (95.23) | 1697 (95.34) | 1645 (95.81) | |
Against COG DB | 1209 (65.53) | 1123 (63.09) | 1423 (82.88) | |
Against ACLAME DB | 226 (12.25) | 223 (12.53) | 335 (19.51) | |
plasmids | 197 (10.68) | 187 (10.51) | 277 (16.13) | |
phages | 5 (0.27) | 10 (0.56) | 14 (0.82) | |
prophages | 24 (1.30) | 26 (1.46) | 44 (2.56) | |
Against VFDB | 37 (2.01) | 27 (1.52) | 68 (3.96) | |
Against ARDB | 7 (0.38) | 7 (0.39) | 14 (0.82) | |
Against PAIDB | 5 (0.27) | 9 (0.51) | N.A. | |
Repetitive seq in bp (%*) | 9393 (0.54) | 11225 (0.64) | N.A. | |
Small RNA | 5889 (0.34) | 8032 (0.46) | N.A. | |
Low complexity | 3131 (0.18) | 2874 (0.16) | N.A. | |
Interspersed repeats | 91 (0.01) | 91 (0.01) | N.A. | |