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Table 1 Summary of E. rhusiopathiae strains SY1027, Fujisawa and ATCC19414 genomes

From: Complete genome assembly and characterization of an outbreak strain of the causative agent of swine erysipelas – Erysipelothrix rhusiopathiae SY1027

   E. rhusiopathiae strains
   SY1027 Fujisawa ATCC 19414
Total genome size (bp)   1752910 1787941 1750000#
GC level (%)   36.36 36.36 N.A.
Predicted ORF   1845 (Glimmer) 1780 (Genbank) 1717 (Genbank)
(method)   1775 (PGAAP)   
Annotated ORF (%^)     
Against KEGG DB   1076 (58.32) 1073 (60.28) 1080 (62.90)
Against NCBI nr DB   1757 (95.23) 1697 (95.34) 1645 (95.81)
Against COG DB   1209 (65.53) 1123 (63.09) 1423 (82.88)
Against ACLAME DB   226 (12.25) 223 (12.53) 335 (19.51)
  plasmids 197 (10.68) 187 (10.51) 277 (16.13)
  phages 5 (0.27) 10 (0.56) 14 (0.82)
  prophages 24 (1.30) 26 (1.46) 44 (2.56)
Against VFDB   37 (2.01) 27 (1.52) 68 (3.96)
Against ARDB   7 (0.38) 7 (0.39) 14 (0.82)
Against PAIDB   5 (0.27) 9 (0.51) N.A.
Repetitive seq in bp (%*)   9393 (0.54) 11225 (0.64) N.A.
  Small RNA 5889 (0.34) 8032 (0.46) N.A.
  Low complexity 3131 (0.18) 2874 (0.16) N.A.
  Interspersed repeats 91 (0.01) 91 (0.01) N.A.
  1. Footnotes: #denotes the approximate number according to public database; ^denotes number of genes in percentage to total number of predicted open-reading frames by Glimmer 3.02; *denotes length of sequence in percentage to total genome length; DB – abbreviation for database; seq– abbreviation for sequence; N.A. – non-applicable as strain ATCC19414 genome is only a draft assembly.