pCT gene | Description | Primer sequence | Amplimer size (bp) (WT/inactivation) |
---|---|---|---|
Sigma factor pCT_066 | Confirmation forward | ACAGCGTCTTCTCGTATCCA | 1289/1675 |
Confirmation reverse | GTTCTTCCAGCTGACGTAAC | 1289/1675 | |
Recombination 1 | GGAGGGCGTCTCGCTAAAAAAACTTACTCAAACACATCAAGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | GCATTACTTTTTATTCTCGTGAGACTCAAGGTCATTCGGTGGGAATTAGCCATGGTCCAT | 1574 | |
rci | Confirmation forward | AAGGTCATCTGCAGGAGT | 945/1867 |
Confirmation reverse | GTGTCGCAGCAACAATA | 945/1867 | |
Recombination 1 | GGGGGACATGCCGTATGAATCCTGTTGAACTGGTCCGAAAGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | GCAGTGTCACGACAAACAGCCCGTTTCTGCACCCGACAGTGGGAATTAGCCATGGTCCAT | 1574 | |
pilS | Confirmation forward | GCGGAAGGAAGTGAGCATAA | 722/2053 |
Confirmation reverse | CAGTGACATGCTGAAGCAGT | 722/2053 | |
Recombination 1 | TGGTGACCAGATCAATACAGTTTTTCTTCGGCACATTGCTGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | AACCTGCAGACAATCGCCACCAAAATGAAAGCCCAGAAAGGGAATTAGCCATGGTCCAT | 1574 | |
traY | Confirmation forward | GGAGAGTCCGGTCTGTATGA | 2423/2138 |
Confirmation reverse | TGCAACCAGTGTGGTACAG | 2423/2138 | |
Recombination 1 | GTATCCTGGTCTGCCTGTTACTGATGAGTACCATTGCAGCGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | CGGCACAAAACAGCAAAAACAGCAGGAAGTAGAGTGGTGGGGGAATTAGCCATGGTCCAT | 1574 | |
pndACB | Confirmation forward | AAGGATTGTGGCGGACAGGA | 486/1288 |
Confirmation reverse | TGATGACGCACAGGACGGAA | 486/1288 | |
Recombination 1 | CCCAGGCGATTTTTTTATCAATCAACCCAGGGCCCACTGTGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | ATTGAGGTCAGCCTTCGCAACAATCCGGCGGCAGATGTCCGGGAATTAGCCATGGTCCAT | 1574 | |
parB | Confirmation forward | TATTAAAAATAACGCGGCGG | 663/1872 |
Confirmation reverse | GCAAAGTATCACACTGCCAAAA | 663/1872 | |
Recombination 1 | GGAGCGGCGGGAGAGTATAGTCATTATTGTAGTCCGGGTAGTGTAGGCTGGAGCTGCTTC | 1574 | |
Recombination 2 | CTTTTCACTCACCATTATTTTTTCCGCTTCTCTCTGTGCCGGGAATTAGCCATGGTCCAT | 1574 |