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Table 1 Summary of sequenced ten samples

From: The transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome

Sample Total pair reads Total mapped rate Total mapped Perfect mapped rate Perfect mapped Gene expression rate
All CDS genes Core genome Flexible genome
esl1d 4,615,238 99.5% 4,590,777 97.4% 4,493,396 91.8% 95.1% 85.9%
esl3d 6,456,732 97.4% 6,288,857 90.9% 5,867,878 91.5% 94.7% 85.9%
esl4d 6,624,400 77.5% 5,133,248 75.8% 5,017,983 92.6% 95.9% 86.9%
esl8d 6,449,616 70.4% 4,540,530 70.0% 4,447,655 85.2% 89.0% 78.5%
esl10d 6,430,250 67.5% 4,337,847 64.6% 4,155,228 89.5% 93.0% 83.5%
amp3d 6,630,721 98.0% 6,499,433 93.6% 6,207,018 95.8% 98.2% 91.5%
s6_5h 6,401,265 88.2% 5,646,556 83.8% 5,361,059 88.5% 92.7% 81.1%
s6_10h 6,394,044 87.9% 5,617,168 83.4% 5,330,075 89.1% 93.1% 82.1%
s24_5h 6,391,818 84.8% 5,417,066 79.4% 5,075,743 92.9% 96.2% 87.0%
s24_10h 6,396,571 85.3% 5,453,077 79.2% 5,066,084 92.1% 95.3% 86.4%
  1. esl1d: cultured one day in Pro 99; esl3d: cultured three days in Pro 99; esl4d: cultured four days in Pro 99; esl8d: cultured eight days in Pro 99; esl10d: cultured ten days in Pro 99; amp3d: cultured three days in AMP; s6_5h: Log-phase cells cultured five hours in AMP with 6 mM NaHCO3; s6_10h: Log-phase cells cultured ten hours in AMP with 6 mM NaHCO3; s24_5h: Log-phase cells cultured five hours in AMP with 24 mM NaHCO3; s24_10h: Log-phase cells cultured ten hours in AMP with 24 mM NaHCO3.
  2. All cultures were incubated at 21°C and constantly irradiated with 28 μmol quanta m-2 s-1.