Table 1 Summary of sequenced ten samples
From: The transcriptome landscape of Prochlorococcus MED4 and the factors for stabilizing the core genome
Sample | Total pair reads | Total mapped rate | Total mapped | Perfect mapped rate | Perfect mapped | Gene expression rate | ||
|---|---|---|---|---|---|---|---|---|
All CDS genes | Core genome | Flexible genome | ||||||
esl1d | 4,615,238 | 99.5% | 4,590,777 | 97.4% | 4,493,396 | 91.8% | 95.1% | 85.9% |
esl3d | 6,456,732 | 97.4% | 6,288,857 | 90.9% | 5,867,878 | 91.5% | 94.7% | 85.9% |
esl4d | 6,624,400 | 77.5% | 5,133,248 | 75.8% | 5,017,983 | 92.6% | 95.9% | 86.9% |
esl8d | 6,449,616 | 70.4% | 4,540,530 | 70.0% | 4,447,655 | 85.2% | 89.0% | 78.5% |
esl10d | 6,430,250 | 67.5% | 4,337,847 | 64.6% | 4,155,228 | 89.5% | 93.0% | 83.5% |
amp3d | 6,630,721 | 98.0% | 6,499,433 | 93.6% | 6,207,018 | 95.8% | 98.2% | 91.5% |
s6_5h | 6,401,265 | 88.2% | 5,646,556 | 83.8% | 5,361,059 | 88.5% | 92.7% | 81.1% |
s6_10h | 6,394,044 | 87.9% | 5,617,168 | 83.4% | 5,330,075 | 89.1% | 93.1% | 82.1% |
s24_5h | 6,391,818 | 84.8% | 5,417,066 | 79.4% | 5,075,743 | 92.9% | 96.2% | 87.0% |
s24_10h | 6,396,571 | 85.3% | 5,453,077 | 79.2% | 5,066,084 | 92.1% | 95.3% | 86.4% |