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Table 4 Characterization of the dominant bacteria through molecular signature of 16S rRNA genes amplified from the genomic DNA extracted from the bacterial isolates isolated from the composting during different phase

From: Assessment of bacterial diversity during composting of agricultural byproducts

Laboratory designation

Morphological features (Gram staining) & Phylogenetic group

Isolate name with Accession no

16S r DNA similarity (nucleotide identity)

Accession no. of nearest neighbor

Temperature & phase

J

+,cocci; firmicutes

Staphylococcus sciuri Durck1 AM778178

94%

EF204304.1

30°C & Mesophilic

8

+,rods ; firmicutes

Bacillus pumilus Durck14 AM778191

95%

AY647298.1

 

30

+,rods ; firmicutes

Bacillus subtilis Durck10 AM778185

91%

AY879290.1

 

G

+,cocci; firmicutes

Staphylococcus sciuri Durck9 AM778188

98%

AB188210.1

 

PQ

+,rods ; firmicutes

Bacillus subtilis Durck7 AM778184

90%

AY881638.1

 

A

+,rods; firmicutes

Bacillus subtilis Durck12 AM778189

99%

AY881638.1

 

38

+,rods; firmicutes

Bacillus pumilus Durck8 AM778187

99%

AB244427.1

 

14

+,rods; firmicutes

Bacillus flexus Durck6 AM778183

96%

EF157301.1

 

31(a)

+,rods ; firmicutes

Bacillus flexus Durck15 AM778192

96%

DQ365587.1

 

BC

+,cocci; firmicutes

Staphylococcus sciuri Durck16 AM884572

99%

AM778188.1

 

red

-,rods; γ-proteobacteria

Serratia marcescens Durck24 FR865468

91%

EU781738.1

 

H

-,rods ; γ-proteobacteria

Klebsiella pneumoniae Durck21 AM884577

96%

EU078621.1

 

17

-,rods ; γ-proteobacteria

Enterobacter sakazakii Durck19 AM884575

97%

CP000783.1

35°C & Mesophilic

actin 6

+,rods ; firmicutes

Bacillus pumilus Durck23 AM884579

99%

DQ270752.1

 

3

+,rods; firmicutes

Bacillus cereus Durck30 FR865474

94%

EU624445.1

 

QR

+,rods; actinobacteria

Microbacterium sp. Durck18 AM884574

99%

AJ919993.1

 

B

+,rods ; firmicutes

Lysinibacillus fusiformis Durck2 AM778179

91%

DQ333300.1

40°C & Thermophilic

M

+,cocci; actinobacteria

Kocuria flavus Durck22 AM884578

98%

EF675624.1

 

D

+,rods; firmicutes

Terribacillus halophilus Durck28 FR865472

94%

AB243849.1

 

14

+,rods; firmicutes

Bacillus flexus Durck5 AM778182

94%

DQ412062.1

 

26

-,rods ; β-proteobacteria

Acidovorax sp. Durck31 FR865475

90%

AY258065.1

 

X

+,rods; firmicutes

Bacillus nealsonii Durck26 FR865470

91%

DQ416782.1

 

32

-,rods; β-proteobacteria

Comamonas kerstersii Durck29 FR865473

97%

AJ430348.1

45°C & Thermophilic

Y

+,rods; firmicutes

Bacillus benzoevorans Durck27 FR865471

96%

DQ416782.1

 

21

+,rods; firmicutes

Bacillus subtilis Durck17 AM884573

98%

AY971362.1

 

N

+,rods; firmicutes

Bacillus pumilus Durck13 AM778190

92%

AM778187.1

50°C & Thermophilic

IN

+,rods; firmicutes

Bacillus pumilus Durck3 AM778180

98%

AB301019.1

 

Q

+,rods; firmicutes

Bacillus subtilis Durck11 AM778186

99%

AB301021.1

 

actin 5

+,rods; firmicutes

Bacillus subtilis Durck4 AM778181

94%

AB244458.1

35°C & Cooling and Maturation

31

+,rods; firmicutes

Bacillus composteris RC1 Data not shown

Data not shown

 

L

+,rods; firmicutes

Bacillus southcampusis RC2 Data not shown

   

actin 2

+,rods; firmicutes

Bacillus licheniformis Durck20 AM884576

97%

DQ071561.1

 

actin 1

+,rods; firmicutes

Bacillus circulans Durck25 FR865469

95%

AB189702.1

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