From: Assessment of bacterial diversity during composting of agricultural byproducts
Laboratory designation | Morphological features (Gram staining) & Phylogenetic group | Isolate name with Accession no | 16S r DNA similarity (nucleotide identity) | Accession no. of nearest neighbor | Temperature & phase |
---|---|---|---|---|---|
J | +,cocci; firmicutes | Staphylococcus sciuri Durck1 AM778178 | 94% | EF204304.1 | 30°C & Mesophilic |
8 | +,rods ; firmicutes | Bacillus pumilus Durck14 AM778191 | 95% | AY647298.1 | Â |
30 | +,rods ; firmicutes | Bacillus subtilis Durck10 AM778185 | 91% | AY879290.1 | Â |
G | +,cocci; firmicutes | Staphylococcus sciuri Durck9 AM778188 | 98% | AB188210.1 | Â |
PQ | +,rods ; firmicutes | Bacillus subtilis Durck7 AM778184 | 90% | AY881638.1 | Â |
A | +,rods; firmicutes | Bacillus subtilis Durck12 AM778189 | 99% | AY881638.1 | Â |
38 | +,rods; firmicutes | Bacillus pumilus Durck8 AM778187 | 99% | AB244427.1 | Â |
14 | +,rods; firmicutes | Bacillus flexus Durck6 AM778183 | 96% | EF157301.1 | Â |
31(a) | +,rods ; firmicutes | Bacillus flexus Durck15 AM778192 | 96% | DQ365587.1 | Â |
BC | +,cocci; firmicutes | Staphylococcus sciuri Durck16 AM884572 | 99% | AM778188.1 | Â |
red | -,rods; γ-proteobacteria | Serratia marcescens Durck24 FR865468 | 91% | EU781738.1 |  |
H | -,rods ; γ-proteobacteria | Klebsiella pneumoniae Durck21 AM884577 | 96% | EU078621.1 |  |
17 | -,rods ; γ-proteobacteria | Enterobacter sakazakii Durck19 AM884575 | 97% | CP000783.1 | 35°C & Mesophilic |
actin 6 | +,rods ; firmicutes | Bacillus pumilus Durck23 AM884579 | 99% | DQ270752.1 | Â |
3 | +,rods; firmicutes | Bacillus cereus Durck30 FR865474 | 94% | EU624445.1 | Â |
QR | +,rods; actinobacteria | Microbacterium sp. Durck18 AM884574 | 99% | AJ919993.1 | Â |
B | +,rods ; firmicutes | Lysinibacillus fusiformis Durck2 AM778179 | 91% | DQ333300.1 | 40°C & Thermophilic |
M | +,cocci; actinobacteria | Kocuria flavus Durck22 AM884578 | 98% | EF675624.1 | Â |
D | +,rods; firmicutes | Terribacillus halophilus Durck28 FR865472 | 94% | AB243849.1 | Â |
14 | +,rods; firmicutes | Bacillus flexus Durck5 AM778182 | 94% | DQ412062.1 | Â |
26 | -,rods ; β-proteobacteria | Acidovorax sp. Durck31 FR865475 | 90% | AY258065.1 |  |
X | +,rods; firmicutes | Bacillus nealsonii Durck26 FR865470 | 91% | DQ416782.1 | Â |
32 | -,rods; β-proteobacteria | Comamonas kerstersii Durck29 FR865473 | 97% | AJ430348.1 | 45°C & Thermophilic |
Y | +,rods; firmicutes | Bacillus benzoevorans Durck27 FR865471 | 96% | DQ416782.1 | Â |
21 | +,rods; firmicutes | Bacillus subtilis Durck17 AM884573 | 98% | AY971362.1 | Â |
N | +,rods; firmicutes | Bacillus pumilus Durck13 AM778190 | 92% | AM778187.1 | 50°C & Thermophilic |
IN | +,rods; firmicutes | Bacillus pumilus Durck3 AM778180 | 98% | AB301019.1 | Â |
Q | +,rods; firmicutes | Bacillus subtilis Durck11 AM778186 | 99% | AB301021.1 | Â |
actin 5 | +,rods; firmicutes | Bacillus subtilis Durck4 AM778181 | 94% | AB244458.1 | 35°C & Cooling and Maturation |
31 | +,rods; firmicutes | Bacillus composteris RC1 Data not shown | Data not shown | Â | |
L | +,rods; firmicutes | Bacillus southcampusis RC2 Data not shown | Â | Â | Â |
actin 2 | +,rods; firmicutes | Bacillus licheniformis Durck20 AM884576 | 97% | DQ071561.1 | Â |
actin 1 | +,rods; firmicutes | Bacillus circulans Durck25 FR865469 | 95% | AB189702.1 | Â |