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Table 9 Summary of primary criteria used for making manual secondary metabolite gene cluster boundary predictions

From: Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

 

ED

EP

ECS

FA

IGD

A. nidulans

24 (18%)

38 (29%)

47 (36%)

17 (13%)

6 (4%)

A. fumigatus

10 (15%)

n/a

39 (57%)

7 (10%)

12 (18%)

A. niger

0 (0%)

n/a

129 (98%)

2 (<2%)

1 (<1%)

A. oryzae

8 (6%)

n/a

90 (73%)

17 (14%)

9 (7%)

  1. Abbreviations: ED, Experimentally determined; EP, Published expression pattern (M. Anderson et al, 2013); ECS, End of cluster synteny; FA, Change in functional annotation; IGD, Increase in intergenic distance; n/a, not applicable.