Gen/ORF | Gene product | Ratio |
---|---|---|
Cluster 1: Phaseolotoxin production (Pht cluster) | ||
PSPPH_4299 | Hypothetical protein (phtU) | 11.86 |
PSPPH_4300 | Membrane protein, putative (phtT) | 8.70 |
PSPPH_4301 | Adenylylsulfate kinase (phtS) | 13.50 |
PSPPH_4302 | Conserved hypothetical protein (phtQ) | 6.23 |
PSPPH_4305 | Hypothetical protein (phtO) | 8.78 |
PSPPH_4306 | Hypothetical protein (phtM) | 15.90 |
PSPPH_4306 | Hypothetical protein (phtM) | 7.29 |
PSPPH_4307 | pyruvate phosphate dikinase PEP/pyruvate binding subunit | 23.74 |
PSPPH_4317 | Hypothetical protein | 11.52 |
PSPPH_4323 | Hypothetical protein | 2.13 |
argK | control | 3.30 |
phtA | control | 4.96 |
phtD | control | 6.50 |
desI | control | 14.97 |
phtL | control | 7.64 |
phtMN | control | 1.81 |
amtA | control | 10.34 |
Cluster 2: Genes involved in Non-ribosomal synthesis | ||
PSPPH_4538 | transposon Tn7-like transposase protein A | 1.67 |
PSPPH_4539 | transposon Tn7-like transposase protein B | 1.70 |
PSPPH_4544 | hypothetical protein PSPPH_4544 | 8.08 |
PSPPH_4544 | hypothetical protein PSPPH_4544 | 7.26 |
PSPPH_4546 | hypothetical protein | 9.44 |
PSPPH_4549 | hypothetical protein PSPPH_4549 | 9.13 |
PSPPH_4553 | major facilitator family protein | 15.83 |
PSPPH_4554 | arginine aminomutase, putative | 12.67 |
PSPPH_4555 | conserved hypothetical protein | 7.46 |
Cluster 3: Type VI secretion system | ||
PSPPH_0122 | hcp | 2.13 |
PSPPH_0124 | hypothetical protein | 1.66 |
PSPPH_0125 | icmF | 1.94 |
PSPPH_0131 | HsiG | 1.61 |
PSPPH_0135 | hypothetical protein | 1.64 |
PSPPH_4978 | prophage PSPPH06, putative reverse transcriptase/maturase | 1.65 |
PSPPH_4979 | prophage PSPPH06, putative reverse transcriptase/maturase | 2.68 |
PSPPH_4984 | prophage PSPPH06, site-specific recombinase, phage integrase family | 1.70 |
Cluster 4: Genes involved in membrane synthesis | ||
PSPPH_1430 | leucine-rich repeat domain protein | 1.75 |
PSPPH_1464 | lipoprotein, putative | 1.66 |
PSPPH_1708 | ABC transporter, periplasmic substrate-binding protein | 1.84 |
PSPPH_2260 | UTP-glucose-1-phosphate uridylyltransferase | 1.72 |
PSPPH_2542 | membrane protein, putative | 1.94 |
PSPPH_2643 | outer membrane efflux protein | 1.68 |
PSPPH_2654 | lipoprotein, putative | 1.55 |
PSPPH_2842 | lipoprotein, putative | 1.55 |
PSPPH_3226 | glycosyl transferase, group 1 family protein | 1.72 |
PSPPH_3288 | predicted periplasmic lipoprotein | 2.05 |
PSPPH_3810 | lipoprotein | 1.71 |
PSPPH_3916 | membrane protein, putative | 1.86 |
PSPPH_4139 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | 1.55 |
PSPPH_4669 | acetyltransferase, GNAT family | 1.73 |
PSPPH_4682 | lipopolysaccharide biosynthesis protein, putative | 3.03 |
PSPPH_5220 | inner membrane protein, 60 kDa | 1.61 |
Cluster 5: Genes involved in motility | ||
PSPPH_0730 | type IV pilus-associated protein, putative | 1.74 |
PSPPH_0818 | type IV pilus prepilin peptidase PilD | 1.53 |
PSPPH_0820 | type IV pilus biogenesis protein PilB | 1.53 |
PSPPH_1200 | pili assembly chaperone | 2.03 |
PSPPH_3387 | flagellar regulator FleQ | 1.64 |
PSPPH_3880 | CheW domain protein WspB | 1.94 |
PSPPH_3881 | methyl-accepting chemotaxis protein WspA | 1.5 |
Cluster 6: Oxidative stress response genes and iron metabolism | ||
PSPPH_1309 | cysteine desulfurase IscS | 1.93 |
PSPPH_1311 | iron-sulfur cluster assembly protein IscA | 1.69 |
PSPPH_1909 | RNA polymerase sigma-70 family protein. pvdS | 1.59 |
PSPPH_1923 | pyoverdine sidechain peptide synthetase I, epsilon-Lys module | 1.70 |
PSPPH_2117 | FecR protein superfamily | 2.05 |
PSPPH_3007 | iron ABC transporter, permease protein, putative | 1.61 |
PSPPH_3274 | catalase KatB | 2.31 |
PSPPH_3274 | catalase KatB | 1.65 |
PSPPH_3753 | siderophore biosynthesis protein | 1.57 |
Cluster 7: Unknown function | ||
PSPPH_0317 | conserved hypothetical protein | 1.81 |
PSPPH_0611 | conserved hypothetical protein | 2.15 |
PSPPH_0612 | hypothetical protein PSPPH_0612 | 1.94 |
PSPPH_1142 | hypothetical protein PSPPH_1142 | 1.58 |
PSPPH_1230 | hypothetical protein PSPPH_1230 | 1.59 |
PSPPH_1243 | conserved hypothetical protein | 1.98 |
PSPPH_1637 | hypothetical protein | 2.25 |
PSPPH_1835 | conserved hypothetical protein | 1.72 |
PSPPH_1938 | conserved hypothetical protein | 1.52 |
PSPPH_2103 | conserved hypothetical protein | 1.89 |
PSPPH_2116 | conserved hypothetical protein | 1.58 |
PSPPH_2147 | hypothetical protein PSPPH_2147 | 2.51 |
PSPPH_2578 | conserved hypothetical protein | 1.53 |
PSPPH_3212 | conserved hypothetical protein | 1.53 |
PSPPH_3262 | conserved hypothetical protein | 1.60 |
PSPPH_5014 | conserved hypothetical protein | 1.52 |
Cluster 8: Uncharacterized Function | ||
PSPPH_0210 | DNA repair protein RadC | 1.56 |
PSPPH_0398 | glutamate synthase, large subunit | 2.63 |
PSPPH_0581 | radical SAM domain protein | 1.53 |
PSPPH_0620 | DNA primase | 2.48 |
PSPPH_0622 | O-sialoglycoprotein endopeptidase | 1.87 |
PSPPH_0625 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | 1.62 |
PSPPH_0627 | SpoVR like family protein | 2.10 |
PSPPH_0629 | protein kinase | 1.65 |
PSPPH_0703 | phosphonate ABC transporter permease protein phnE | 1.73 |
PSPPH_1141 | ISPsy20, transposase IstB | 1.51 |
PSPPH_1150 | conserved domain protein-Divergente HU family | 1.61 |
PSPPH_1179 | DNA-binding response regulator GltR | 1.54 |
PSPPH_1244 | transcriptional regulator, AsnC family | 1.89 |
PSPPH_1306 | RNA methyltransferase, TrmH family, group 1 | 1.545 |
PSPPH_1378 | Methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) | 2.56 |
PSPPH_1406 | ATP-dependent helicase, DinG family | 1.77 |
PSPPH_1468 | nucleic acid binding protein | 1.58 |
PSPPH_1595 | transcriptional regulator, GntR family | 2.58 |
PSPPH_1661 | cvpA family protein | 1.66 |
PSPPH_1746 | oxidoreductase, aldo/keto reductase family | 1.92 |
PSPPH_2216 | zinc carboxypeptidase domain protein | 1.89 |
PSPPH_2221 | precorrin-4 C11-methyltransferase | 1.52 |
PSPPH_2506 | L-arabinose ABC transporter, periplasmic L-arabinose-binding protein | 1.62 |
PSPPH_2551 | oxidoreductase, putative | 1.84 |
PSPPH_2563 | transcriptional regulator, GntR family | 1.53 |
PSPPH_2580 | transcriptional regulator, LysR family | 1.97 |
PSPPH_2620 | 5-methyltetrahydrofolate--homocysteine methyltransferase | 1.85 |
PSPPH_2690 | oxidoreductase, FAD-binding, putative | 1.56 |
PSPPH_2781 | TspO/MBR family protein | 1.99 |
PSPPH_2840 | sodium/hydrogen exchanger family protein | 1.55 |
PSPPH_2847 | general secretion pathway protein GspK, putative | 1.89 |
PSPPH_3045 | transporter, AcrB/AcrD/AcrF family | 1.64 |
PSPPH_3252 | glycolate oxidase, GlcD subunit | 1.97 |
PSPPH_3291 | oxidoreductase, molybdopterin-binding | 1.88 |
PSPPH_3294 | DNA-binding heavy metal response regulator | 1.81 |
PSPPH_3654 | transcriptional regulator, TetR family | 1.51 |
PSPPH_3906 | sensor histidine kinase | 1.65 |
PSPPH_3946 | DNA repair protein RecO | 1.66 |
PSPPH_3962 | DNA-binding response regulator TctD | 1.77 |
PSPPH_4137 | histidinol dehydrogenase | 1.63 |
PSPPH_4151 | RNA polymerase sigma-54 factor RpoN | 1.69 |
PSPPH_4152 | ribosomal subunit interface protein | 1.86 |
PSPPH_4332 | DNA repair protein RadA | 1.76 |
PSPPH_4372 | RNA 2'-phosphotransferase | 1.55 |
PSPPH_4634 | bmp family protein | 2.99 |
PSPPH_4641 | YccA | 1.68 |
PSPPH_4717 | dethiobiotin synthetase | 2.09 |
PSPPH_4866 | proline-specific permease proY | 1.54 |
PSPPH_4925 | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | 1.62 |
PSPPH_5142 | oxaloacetate decarboxylase alpha subunit | 2.35 |