Genotype-phenotype matching analysis of 38 Lactococcus lactisstrains using random forest methods

BMC Microbiology

Table 1 Genotype and phenotype information for 38 L.lactis strains that was used in genotype-phenotype matching

Strain name	Subspecies	Isolation origin	# present genes (out of 4026)	# phenotyping experiments (out of 130^a)
AM2	cremoris	dairy	2563	119
ATCC19435T	lactis	dairy	2047	121
DRA4	lactis	dairy	2182	123
E34	lactis	plant	2022	123
FG2	cremoris	dairy	2301	117
HP	cremoris	dairy	2307	122
IL1403	lactis	dairy	2289	127
K231	lactis	plant	2067	124
K337	lactis	plant	2002	126
KF134	lactis	plant	2039	128
KF146	lactis	plant	2087	130
KF147	lactis	plant	2472	126
KF196	lactis	plant	1978	126
KF201	lactis	plant	2020	125
KF24	lactis	plant	2119	128
KF282	lactis	plant	1937	127
KF67	lactis	plant	2096	128
KF7	lactis	plant	2109	125
KW10	cremoris	plant	2039	126
LMG14418	lactis	dairy	2259	113
LMG6897T	cremoris	dairy	2308	113
LMG8520	hordniae	insect	1903	113
LMG8526	lactis	plant	1985	123
LMG9446	lactis	plant	1983	125
LMG9449	lactis	plant	2221	125
Li-1	lactis	plant	2198	126
M20	lactis	plant	2090	121
MG1363	cremoris	dairy	2397	125
ML8	lactis	dairy	2339	123
N41	cremoris	plant	2405	121
N42	lactis	plant	2361	125
NCDO763	cremoris	dairy	2414	126
NCDO895	lactis	dairy	2285	124
P7266	lactis	plant	1917	126
P7304	lactis	plant	2223	127
SK11	cremoris	dairy	2551	119
UC317	lactis	dairy	2280	125
V4	cremoris	dairy	2313	113

a: In total there are 207 phenotyping experiments (see Additional file 1), but only 130 were usable in our analysis (see Results).

ISSN: 1471-2180