Molecular analysis of non-O1/non-O139 Vibrio choleraeisolated from hospitalised patients in China

Luo, Yun; Ye, Julian; Jin, Dazhi; Ding, Gangqiang; Zhang, Zheng; Mei, Lingling; Octavia, Sophie; Lan, Ruiting

doi:10.1186/1471-2180-13-52

BMC Microbiology

Table 1 Details of Vibrio cholerae strains analysed in this study

From: Molecular analysis of non-O1/non-O139 Vibrio choleraeisolated from hospitalised patients in China

Strain	Place^†	Source	Year	Pulse type	ctxAB	toxR	hlyA	tcpA ^*	zot	NAG-ST	T3SS	T3SS	adk	gyrB	mdh	metE	pntA	purM	pyrC	Sequence type
Strain	Place^†	Source	Year	Pulse type	ctxAB	toxR	hlyA	tcpA ^*	zot	NAG-ST	( vcsC2)	( vcsV2)	adk	gyrB	mdh	metE	pntA	purM	pyrC	Sequence type
N11192	HZ	sporadic	2011	24	-	+	+	-	-	-	-	-	39	45	14	67	50	1	42	93
N10001	HZ	surveillance	2010	13	-	+	+	-	-	-	+	+	2	44	11	64	6	8	10	94
N10002	HZ	surveillance	2010	N/A^‡	-	+	+	-	-	-	+	+	2	23	45	48	47	35	5	89
N10003	HZ	surveillance	2010	14	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N10004	HZ	surveillance	2010	15	-	+	+	-	-	-	+	+	2	38	14	56	6	36	51	83
N10005	HZ	surveillance	2010	16	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N10006	HZ	surveillance	2010	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N10007	HZ	surveillance	2010	18	-	+	+	-	-	-	-	+	19	46	14	22	48	1	52	86
N10008	HZ	surveillance	2010	19	-	+	+	-	-	-	-	-	38	47	44	65	49	1	53	91
N10009	HZ	surveillance	2010	20	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11191	JH	sporadic	2011	23	-	+	+	-	-	-	-	-	24	36	1	50	30	18	45	81
N743	LS	outbreak B	2006	8	-	-	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N744	LS	outbreak B	2006	9	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N745	LS	outbreak B	2006	10	-	+	+	-	-	-	+	-	2	5	45	56	6	36	51	80
N746	LS	outbreak B	2006	11	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N747	LS	outbreak B	2006	9	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N748	LS	outbreak B	2006	9	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N749	LS	outbreak B	2006	9	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N750	LS	sporadic	2007	12	-	+	+	-	-	-	+	+	11	27	11	63	19	1	4	88
N733	NB	outbreak A	2005	2	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N734	NB	outbreak A	2005	2	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N735	NB	outbreak A	2005	3	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N737	NB	outbreak A	2005	2	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N738	NB	outbreak A	2005	2	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N739	NB	outbreak A	2005	4	-	+	+	-	-	-	+	+	2	5	29	19	6	36	51	82
N11193	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11194	QZ	outbreak C	2011	25	-	+	+	-	-	-	-	-	27	5	14	22	30	18	45	92
N11196	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11198	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11199	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11200	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11201	QZ	outbreak C	2011	25	-	+	+	-	-	-	-	-	27	5	14	22	30	18	45	92
N11202	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N11203	QZ	outbreak C	2011	17	-	+	+	-	-	-	+	+	2	5	45	56	6	36	51	80
N740	QZ	sporadic	2006	6	-	+	+	-	-	-	-	+	26	5	46	50	31	14	45	90
N11041	SX	sporadic	2011	21	-	+	+	-	-	-	+	+	19	1	14	66	48	1	52	87
N11072	SX	sporadic	2011	22	-	+	+	-	-	-	+	+	3	41	4	48	47	35	5	84
N742	TZ	sporadic	2006	7	-	+	+	-	-	-	+	+	11	27	11	63	19	1	4	88
N732	WZ	sporadic	2005	1	-	+	+	-	-	-	+	+	3	23	15	48	47	35	5	85
N736	WZ	sporadic	2005	5	-	+	+	-	-	-	+	+	3	23	15	48	47	35	5	85

^† Place corresponds to different cities in Zhejiang province: HZ - Hangzhou; JH - Jinhua; LS - Lishui; NB - Ningbo; QZ - Quzhou; SX - Shaoxing; TZ - Taizhou; and WZ – Wenzhou.
^‡ The isolate was unable to be typed by PFGE.
^*Two primer pairs of tcpA (see Table 2) were used. Both were negative.

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ISSN: 1471-2180

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