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Table 1 Homology of SfI to S. flexneri phage SfV and E. coli prophage e14 and lambda

From: Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri

Phage or prophage Nucleotide position Homologous nucleotide position in SfI (total length [bp]) % identity at nucleotide level SfI ORFsa % of SfI genome
SfV 9 – 2,211 2 – 2,194 (2,193) 98 orf1, (orf2) 45.6
5,793 – 17,782 6,053 – 18,042 (11,990) 97 orf9 - orf24
19,146 – 22,042 19,787 – 22,681 (2,895) 98 (orf26), orf2 - orf29, attP
36,666 – 37,074 37,964 – 38,372 (409) 89 (orf66)
Lambda 30,418 – 30,910 23,002 – 23,493 (491) 95 (orf31), orf32, (orf33) 28.4
31,206 – 34,381 24,281 – 27,456 (3,176) 98 (orf35), orf36 - orf43
35,104 – 35,386 27,708 – 27,990 (283) 98 (orf45)
35,496 – 41,084 28,052 – 33,640 (5,590) 98 orf46 - orf55
42,097 – 43,068 2 - 2,194 (2,193) 97 orf57 - orf59, (orf60)
  45,966 – 46,361 6,053 -18,042 (11,990) 80 (orf64)  
e14 2,840,259 - 2,859,298b 1 - 17,234, 36,721 - 38,389 (17,660) 97 orf1 - orf22, (orf66) 46%
  1. a Parentheses indicate that the region of homology starts or ends within an ORF.
  2. bE. coli S88 strain genome (accession no. CU928161).