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Table 1 Homology of SfI to S. flexneri phage SfV and E. coli prophage e14 and lambda

From: Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri

Phage or prophage

Nucleotide position

Homologous nucleotide position in SfI (total length [bp])

% identity at nucleotide level

SfI ORFsa

% of SfI genome

SfV

9 – 2,211

2 – 2,194 (2,193)

98

orf1, (orf2)

45.6

5,793 – 17,782

6,053 – 18,042 (11,990)

97

orf9 - orf24

19,146 – 22,042

19,787 – 22,681 (2,895)

98

(orf26), orf2 - orf29, attP

36,666 – 37,074

37,964 – 38,372 (409)

89

(orf66)

Lambda

30,418 – 30,910

23,002 – 23,493 (491)

95

(orf31), orf32, (orf33)

28.4

31,206 – 34,381

24,281 – 27,456 (3,176)

98

(orf35), orf36 - orf43

35,104 – 35,386

27,708 – 27,990 (283)

98

(orf45)

35,496 – 41,084

28,052 – 33,640 (5,590)

98

orf46 - orf55

42,097 – 43,068

2 - 2,194 (2,193)

97

orf57 - orf59, (orf60)

 

45,966 – 46,361

6,053 -18,042 (11,990)

80

(orf64)

 

e14

2,840,259 - 2,859,298b

1 - 17,234, 36,721 - 38,389 (17,660)

97

orf1 - orf22, (orf66)

46%

  1. a Parentheses indicate that the region of homology starts or ends within an ORF.
  2. bE. coli S88 strain genome (accession no. CU928161).