Table 2 Spacers allelic polymorphism and MST a genotypes of M. abscessus , “ M. bolletii” and “ M. massiliense” isolates
Isolates | Spacer1 | Spacer2 | Spacer3 | Spacer4 | Spacer5 | Spacer6 | Spacer7 | Spacer8 | Genotype |
|---|---|---|---|---|---|---|---|---|---|
M.abscessus_ ATCC19977_CIP104536T | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_ DSMZ44567 | 2 | 1 | 2 | 2 | 2 | 1 | 2 | 1 | 2 |
P1 | 2 | 1 | 2 | 2 | 2 | 1 | 2 | 1 | 2 |
P2.1 | 1 | 2 | 1 | 3 | 1 | 1 | 2 | 2 | 3 |
P2.2 | 1 | 2 | 1 | 3 | 1 | 1 | 2 | 2 | 3 |
P2.3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
P2.4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
P2.5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
P2.6 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
P3.1 | 3 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 4 |
P3.2 | 3 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 4 |
P4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 5 |
P5 | 1 | 1 | 1 | 1 | 3 | 1 | 2 | 1 | 6 |
P6 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
P7 | 4 | 1 | 2 | 4 | 4 | 1 | 2 | 1 | 7 |
P8 | 4 | 1 | 2 | 4 | 4 | 1 | 3 | 1 | 8 |
M.abscessus_3A-0930-R_3A_0930_R | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_3A-0930-S_3A_0930_S | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_3A-0122-S_3A_0122_S | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_3A-0731_3A_0731 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_3A-0122-R_3A_0122_R | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_3A-0119-R_3A_0119_R | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_6G-0728-R_M6G_0728_R | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_6G-0212_M6G_0212 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus _6G-1108_6G_1108 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus _6G-0728-S_6G_0728_S | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_6G-0125-R_6G_0125_R | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus _6G-0125-S_6G_0125_S | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M.abscessus_4S-0116-S_4S_0116_S | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_4S-0116-R_4S_0116_R | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_4S-0206_M4S_0206 | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_4S-0726-RB_4S_0726_RB | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_4S-0303_4S_0303 | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_4S-0726-RA_4S_0726_RA | 5 | 1 | 2 | 5 | 5 | 2 | 2 | 2 | 9 |
M.abscessus_M93 | 3 | 1 | 2 | 6 | 6 | 1 | 2 | 3 | 10 |
M.abscessus_M94 | 2 | 1 | 2 | 2 | 7 | 1 | 4 | 2 | 11 |
M.abscessus_M152 | 2 | 1 | 2 | 7 | 7 | 1 | 2 | 3 | 12 |
M.bolletti_ CIP108541T | 6 | 3 | 3 | 3 | 8 | 1 | 5 | 2 | 13 |
P9 | 6 | 3 | 3 | 3 | 8 | 1 | 5 | 2 | 13 |
P10 | 7 | 4 | 1 | 3 | 8 | 1 | 2 | 2 | 14 |
M.abscessus_M24 | 8 | 3 | 4 | 8 | 8 | 1 | 2 | 2 | 15 |
M.massilliense_ CIP108297T | 5 | 5 | 5 | 9 | 9 | 1 | 6 | 3 | 16 |
P11 | 5 | 5 | 5 | 9 | 9 | 1 | 6 | 3 | 16 |
M.massiliense _2B-0912-S_2B_0912_S | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_2B-030_ M2B_0307 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_2B-0912-R_2B_0912_R | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_2B-0626_M2B_0626 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_2B-1231_M2B_1231 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_2B-0107_M2B_0107 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense _1S-154-0310_M1S_154_0310 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_1S-152-0914_M1S_152_0914 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_1S-153-0915_M1S_153_0915 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense_1S-151-0930_M1S_151_0930 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.massiliense _M18 | 9 | 5 | 6 | 10 | 10 | 2 | 7 | 3 | 17 |
M.abscessus_M159 | 9 | 6 | 6 | 9 | 10 | 3 | 7 | 4 | 18 |
M.abscessus_47J26 | 9 | 5 | 6 | 6 | 11 | 4 | 7 | 3 | 19 |
M.abscessus_M172 | 10 | 7 | 2 | 9 | 12 | 3 | 8 | 5 | 20 |
M.abscessus_M154 | 10 | 7 | 2 | 9 | 12 | 3 | 8 | 5 | 20 |
M.abscessus_5S-1215_5S_1215 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-1212_5S_1212 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-0817_5S_0817 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-0708_5S_0708 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-0422_5S_0422 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-0304_5S_0304 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_5S-0421_5S_0421 | 11 | 5 | 2 | 6 | 13 | 2 | 6 | 2 | 21 |
M.abscessus_M156 | 10 | 7 | 2 | 11 | 12 | 3 | 9 | 5 | 22 |
M.abscessus_M148 | 10 | 7 | 2 | 11 | 12 | 3 | 9 | 5 | 23 |
M.abscessus_M139 | 10 | 5 | 2 | 11 | 14 | 3 | 10 | 3 | 24 |
DI | 0.8295 | 0.6228 | 0.6969 | 0.8001 | 0.8371 | 0.6038 | 0.8084 | 0.7158 | 0.912 |