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Table 3 Detection of the atpE gene (locus Rv1305 in M. tuberculosis genome) in different Mycobacterium species (25 ± 15 ng of DNA) and non-mycobacterial microorganisms (50 ± 15 ng of DNA)

From: atpE gene as a new useful specific molecular target to quantify Mycobacteriumin environmental samples

 

Microorganism codificationa

Microorganism

Results

A

CPS MC13

M. arupense

Detected

 

CPS MC11

M. austroafricanum

Detected

 

ATCC 25291T

M. avium subsp. avium

Detected

 

CIP 1173/P2

M. bovis (BCG)

Detected

 

ATCC 19977T

M. chelonae spp. abscessus

Detected

 

ATCC 35752T

M. chelonae spp. chelonae

Detected

 

CIP 105388 T

M. gadium

Detected

 

ATCC 14470T

M. gordonae

Detected

 

ATCC 6841T

M. fortuitum spp. fortuitum

Detected

 

CPS MC8

M. insubricum

Detected

 

ATCC 15985T

M. intracellulare

Detected

 

ATCC 12478T

M. kansasii

Detected

 

CIP 105465T

M. lentiflavum

Detected

 

THAI 53

M. leprae

Detected

 

CPS MC10

M. llatzerense

Detected

 

ATCC 927T

M. marinum

Detected

 

CIP 105223T

M. mucogenicum

Detected

 

CIP 106811T

M. nonchromogenicum

Detected

 

CPS MC6

M. psychrotolerans

Detected

 

ATCC 14467T

M. peregrinum

Detected

 

CPS MC9

M. porcinum

Detected

 

CIP 105416T

M. scrofulaceum

Detected

 

CPS MC7

M. setense

Detected

 

ATCC 25275T

M. simiae

Detected

 

ATCC 19420T

M. smegmatis

Detected

 

ATCC 35799T

M. szulgai

Detected

 

CIP 104321T

M. terrae

Detected

 

CIP 106368

M. tusciae

Detected

 

ATCC 25618T

M. tuberculosis (H37Rv)

Detected

 

CPS CR08085632

M. ulcerans

Detected

 

ATCC 19250T

M. xenopi

Detected

B

CMR SC10

Acinetobacter sp.

ND

 

CMR SC9

Aeromonas sp.

ND

 

CMR SC23

Arthrobacter sp.

ND

 

CMR SC44

Aspergillus sp.

ND

 

CMR SC5

Bacillus sp.

ND

 

CMR SC24

Brevundimonas sp.

ND

 

ATCC 6871T

C. ammoniagenes

ND

 

ATCC 13032T

C. glutamicum

ND

 

ATCC 10700T

C. pseudodiphtheriticum

ND

 

CMR SC35

Escherishia sp.

ND

 

CMR SC19

Flavobacterium sp.

ND

 

ATCC 43504T

Helicobacter pylori

ND

 

CMR SC45

Kocuria sp.

ND

 

CMR SC31

Leuclercia sp.

ND

 

CMR SC28

Leucobacter sp.

ND

 

CMR SC29

Microbacterium sp.

ND

 

CMR SC3

Micrococcus sp.

ND

 

DSM 44546T

N. cerradoensis

ND

 

DSM 44490T

N. cummidelens

ND

 

IFM 10152

N. farcinica

ND

 

CMR SC42

Penicillium sp.

ND

 

CMR SC1

Pseudomonas sp.

ND

 

CMR SC26

Rhodococcus sp.

ND

 

CMR SC34

Serracia fonticola

ND

 

CMR SC22

Solibacillus sp.

ND

 

CMR SC12

Staphylococcus caprae

ND

 

CMR SC6

Staphylococcus hominis

ND

 

CMR SC46

Staphylococcus lugdunensis

ND

 

CMR SC49

Streptomyces sp.

ND

 

CMR SC41

Trichoderma sp.

ND

  1. TaqMan® real-time PCR amplification was performed using forward primer FatpE, reverse primer RatpE and probe PatpE in duplicate assays. ND stands for not detected sigmoidal curve.
  2. aATCC: American Type Culture Collection; CPS: Collection de la Pitié-Salpêtrière, Paris, France; T: type strain; CIP: Collection de l′Institut Pasteur, Paris, France; CMR: Collection de Microorganismes de Radomski et al. 2010 [17], Paris, France; DSM: DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany; IFM: Culture Collection of the Research Centre for Pathogenic Fungi and Microbial Toxicoses, Chiba, Japan.