Table 2 Relative abundance of RNase III-dependent or -independent transcripts by different level of YmdB or RNase III
From: Escherichia coliYmdB regulates biofilm formation independently of its role as an RNase III modulator
RNase III-dependent genes | Microarray1 | qPCR-Δ ymdB2 | qPCR-YmdB3 | qPCR-rnc144 |
|---|---|---|---|---|
mltD | 3.66 | 3.06 ± 0.04 | 7.37 ± 0.03 | 39.80 ± 0.01 |
PnP | 3.06 | 0.84 ± 0.01 | 3.27 ± 0.36 | 8.02 ± 0.02 |
plsX | 3.01 | 2.98 ± 0.01 | 2.86 ± 0.31 | 21.37 ± 0.01 |
ahpF | 2.48 | 0.90 ± 0.02 | 3.34 ± 0.33 | 7.72 ± 0.01 |
yhdE | 2.26 | 1.90 ± 0.01 | 2.37 ± 0.20 | 3.93 ± 0.01 |
RNase III-independent genes | Microarray 1 | qPCR- Δ ymdB 2 | qPCR-YmdB 3 | qPCR- rnc14 4 |
pspB | 5.18 | 0.88 ± 0.13 | 1.53 ± 0.01 | 1.36 ± 0.01 |
pspA | 4.46 | 0.78 ± 0.01 | 1.50 ± 0.01 | 1.15 ± 0.01 |
pspD | 4.30 | 0.82 ± 0.01 | 2.45 ± 0.06 | 1.86 ± 0.02 |
pspC | 3.86 | 1.01 ± 0.01 | 1.59 ± 0.02 | 1.38 ± 0.02 |
ahpC | 2.81 | 0.67 ± 0.01 | 3.73 ± 0.01 | 3.30 ± 0.01 |