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Table 1 Alpha diversity estimates of the Atlantic cod intestinal microbial community

From: Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location

 

OTU

Shannon index

Inverse Simpsons index

Specimen

μ

σ

μ

σ

μ

σ

1

97

4.03

2.62

0.01

7.36

0.10

2

26

2.60

0.30

0.01

1.12

0.00

3

89

3.83

1.22

0.02

1.74

0.02

4

108

4.24

2.10

0.02

3.71

0.05

5

96

3.83

2.63

0.01

8.59

0.10

6

73

3.21

0.32

0.01

1.09

0.00

7

163

4.94

2.80

0.02

6.50

0.10

8

24

2.70

1.08

0.01

2.18

0.02

9

158

5.44

3.07

0.01

11.18

0.16

10

77

3.26

1.59

0.02

2.33

0.03

11

136

4.84

2.44

0.02

5.26

0.07

  1. Normalized mean values (μ) and standard deviations (σ) for the number of OTUs, Shannon index and Inverse Simpsons index. Normalized values were obtained by random resampling according to the smallest sample size (n = 11625, specimen 6) and standard errors were obtained by bootstrapping (n = 1000). OTUs are clustered according to a 97% sequence similarity cut-off value.
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BMC Microbiology

ISSN: 1471-2180

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