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Table 3 Diversity and evenness of KEGG pathways

From: Metagenomics of rumen bacteriophage from thirteen lactating dairy cattle

Metagenome source

Sample

Metagenome type

Categories observedN

Shannon diversity Index (H’)

Evenness (E)

This study

Cow 2202C

Virome

20

2.192

0.732

 

Cow 657

Virome

21

2.162

0.710

 

Cow 1995

Virome

22

2.299

0.744

 

Cow 2028

Virome

20

2.052

0.685

 

Cow 2042

Virome

17

2.011

0.710

 

Cow 2165

Virome

16

1.911

0.689

 

Cow 3060

Virome

16

2.150

0.775

 

Cow 4570

Virome

15

2.023

0.747

 

Cow 5679

Virome

18

2.184

0.756

 

Cow 6833

Virome

19

2.125

0.722

 

Cow 6857

Virome

18

2.142

0.741

 

Cow 6870

Virome

16

1.756

0.633

 

Cow 7939

Virome

21

2.200

0.722

 

Average*

Virome

18.4

2.093

0.720

Other Studies

Cow 6993 [8]

Virome

36

2.425

0.677

 

Cow 766 [8]

Virome

34

2.553

0.724

 

Cow 7887 [8]

Virome

35

2.580

0.726

 

Swine Faeces [18]+

Virome

33

2.398

0.686

 

Human Saliva [19]+

Virome

36

2.221

0.620

 

Pond [20]+

Virome

31

2.537

0.739

 

Cow 2202C[6]

Microbial

27

2.731

0.829

 

Cow 3063C[6]

Microbial

30

2.794

0.822

 

Cow 6803C[6]

Microbial

30

2.778

0.817

 

Cow 6852C[6]

Microbial

29

2.809

0.834

 

Cow 6859C[6]

Microbial

29

2.860

0.849

 

Cow 6882C[6]

Microbial

24

2.752

0.866

 

Cow 7920C[6]

Microbial

28

2.762

0.829

  1. *Average of all samples from this study.
  2. CCannulated animal.
  3. NNumber of second level KEGG categories observed in sample’s data.
  4. H’ – Shannon diversity Index.
  5. E – Evenness (H’ / Hmax).
  6. +Multiple samples from study combined.