From: Multilocus sequence analysis of Treponema denticolastrains of diverse origin
Gene | No. of nucleotide sites | G + C (%) | No. (%)of polymorphic sites | Nucleotide diversity(Pi) | Global rate ω(95%CI) | No. of negatively selected sites |
---|---|---|---|---|---|---|
flaA | 1050 | 40.7 ± 0.4 | 197 (18.8) | 0.0308 ± 0.0130 | 0.106 (0.080-0.132) | 3 |
recA | 1245 | 45.7 ± 0.5 | 147 (11.8) | 0.0333 ± 0.0049 | 0.088 (0.065-0.111) | 37 |
pyrH | 696 | 41.8 ± 0.4 | 128 (18.4) | 0.0331 ± 0.0125 | 0.064 (0.043-0.087) | 11 |
ppnK | 855 | 40.9 ± 0.5 | 85 (9.9) | 0.0309 ± 0.0026 | 0.082 (0.053-0.110) | 20 |
dnaN | 1104 | 32.4 ± 0.2 | 98 (8.9) | 0.0261 ± 0.0023 | 0.016 (0.006-0.026) | 25 |
era | 885 | 42.4 ± 0.4 | 115 (13.0) | 0.0309 ± 0.0044 | 0.096 (0.068-0.123) | 31 |
radC | 678 | 43.3 ± 0.2 | 76 (11.2) | 0.0275 ± 0.0048 | 0.032 (0.015-0.050) | 19 |
16S rRNA | 1497 | 52.4 ± 0.1 | 16 (1.1) | 0.0018 ± 0.0005 | N/A* | N/A* |