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Table 1 H. pylori haplotype as determined by MLS in 110 strains and by WGS in 7 strains, included in the in silico analysis

From: Phylogeographic evidence of cognate recognition site patterns and transformation efficiency differences in H. pylori: theory of strain dominance

Host Location Ethnic group N H. pylorihaplotypes
     hpAfrica1 hpEurope hspEAsia hspAmerind
African (19) Burkina Faso Bantu 14 14    
Senegal Wolof 5 5    
European (14) Italy Italian 1   1*   
Germany German 1   1*   
UK English 1   1*   
Sweden Swedish 1   1*   
Spain Spanish 10   10   
Asian (12) Japan Japanese 1    1  
Korea Korean 11    11  
Native American (44) Peru Peruvian 1     1*
Colombia Huitoto 14   10   4
Venezuela Piaroa 7   2   5*
Guahibo 3   3   
Canada Athabaskan 6     6
Canada/ USA Inuit 13   4   9
Mestizo (20) Venezuela Mestizo 9 4 5   
Colombia Mestizo 11 1 10   
North American (N = 1) USA North American 1 1*    
   All 110 25 48 12 25
  1. *Whole genome sequence strain.