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Table 2 Highly transcribed clusters in R. eutropha H16 during cultivation on fructose

From: Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses

Clustersa Gene IDs Representative products or functions Highly transcribed phase(s)
A H16_A0976-A0993 Pilus assembly proteins Growth
B H16_A1047-A1063 NADH dehydrogenase subunits, triosephosphate isomerase TpiA Growth
C H16_A2305-A2321 Translation initiation factor InfB, transcription elongation factor NusA, cytchrome c oxisdase subunits Growth
D H16_A2359-A2369 RNA-binding protein Hfq, GTP-binding protein EngA, histidyl-tRNA synthetase, nucleoside diphosphate kinase Growth
E H16_A2560-A2572 Sigma factor RpoE, sigma E-negative regulatory proteins, fatty acid biosynthesis Growth
F H16_A2889-A2905 Cell wall biogenesis Growth
G H16_A3268-A3282 Cell division proteins, peptidoglycan biosynthesis Growth
H H16_A3457-A3484 Ribosomal proteins, RNA polymerase subunit α, translation initiation factor InfA Growth, PHA production, Stationary
I H16_A3490-A3505 Ribosomal proteins, elongation factors, RNA polymerase subunits ββ’, transcription antiterminator NusG Growth, PHA production, Stationary
J H16_A3636-A3643 F0F1 ATP synthase subunits Growth
K H16_A1949-A1957 Metylmalonyl-CoA mutase, K+ transport flavoprotein PHA production
L H16_B1380-B1395 Calvin-Benson-Bassham cycle PHA production
M H16_B1497-B1503 ABC-type fructose transporter, Entner-Doudoroff pathway Growth
N PHG001-PHG023 Membrane-bound hydrogenase subunits, hydrogenase accessory proteins Growth, PHA production, Stationary
O PHG088-PHG096 Soluble hydrogenase subunits, hydrogenase accessory proteins Growth, Stationary
P PHG416-PHG427 Calvin-Benson-Bassham cycle PHA production
  1. aIndicated in Figure 2.