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Figure 3 | BMC Microbiology

Figure 3

From: Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses

Figure 3

Expression levels of genes involved in central metabolisms including PHA metabolism in R. eutropha H16 at growth phase F16, PHA production phase F26, and stationary phase F36 on fructose. The log2-transformed RPKM values are visualized using the rainbow color scale in the figure. Genes with the P value above the threshold (P > 0.05) are underlined. Abbreviations: F6P, fructose-6-phosphate; F1,6P, fructose-1,6-bisphosphate; G1P, glucose-1-phosphate; G6P, glucose-6-phosphate; 6PGL, 6-phospho-1,5-gluconolactone; 6PGA, 6-phosphogluconate; KDPG, 2-keto-3-deoxygluconate-6-phosphate; UDP-Glc, UDP-glucose; T6P, trehalose-6-phosphate; X5P, xylose-5-phosphate; Ru5P, ribulose-5-phosphate; R5P, ribose-5-phosphate; Ru1,5P, ribulose-1,5-bisphosphate; E4P, erythrose-4-phosphate; S1,7P, sedoheptulose-1,7-bisphosphate; S7P, sedoheptulose-7-phosphate; GAP, glyceraldehyde-3-phosphate; DHAP, dihydroxyacetone phosphate; 1,3-PGA, 1,3-diphsphoglycerate; 3-PGA, 3-phosphoglycerate; 2-PGA, 2-phosphoglycerate; PEP, phosphoenolpyruvate; (R)-3HB-CoA, (R)-3-hydroxybutyryl-CoA; P(3HB), poly((R)-3-hydroxybutyrate); cyt b, cytochrom b subunit; mem, membrane anchor subunit; FAD, flavoprotein subunit; Fe-S, iron-sulfur subunit.

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