Table 3 Sequences analysis of V3 region of 16S rRNA gene from PCR-DGGE
OL group | CS group | ||||
|---|---|---|---|---|---|
Band No | Nearest cultured relative (GenBank accession No) | %a | Band No | Nearest cultured relative (GenBank accession No) | %a |
O-1 | C. populeti (NR026103) | 99 | C-1 | P. ruminicola (NR044632) | 98 |
O-2 | P. salivae (NR024816) | 93 | C-2 | P. loescheii (NR043216) | 96 |
O-3 | St. pasteurianus (NR043660) | 100 | C-3 | C. populeti (NR026103) | 98 |
O-4 | P. dentalis (NR029284) | 94 | C-4 | P. pleuritidis (NR041541) | 94 |
O-5 | P. salivae (NR024816) | 96 | C-5 | C. populeti (NR026103) | 98 |
O-6 | P. denticola (NR042842) | 95 | C-6 | P. pleuritidis (NR041541) | 94 |
O-7 | P. oulorum (NR029147) | 94 | C-7 | P. corporis (NR044627) | 94 |
O-8 | P. buccalis (NR044630) | 94 | C-8 | P. buccalis (NR044630) | 94 |
O-9 | E. cellulosolvens (NR026106) | 98 | C-9 | P. dentalis (NR029284) | 95 |
O-10 | S. dextrinosolvens (NR026476) | 98 | C-10 | S. dextrinosolvens (NR026476) | 98 |
O-11 | P. salivae (NR024816) | 95 | C-11 | P. dentalis (NR029284) | 93 |
O-12 | M. indoligenes (NR043775) | 97 | C-12 | P. melaninogenica (NR042843) | 95 |
O-13 | Ps. ruminis (NR026315) | 99 | C-13 | G. mesophilus (NR041450) | 88 |
O-14 | P. oulorum (NR029147) | 94 | C-14 | E. cellulosolvens (NR026106) | 98 |
O-15 | P. dentalis (NR029284) | 94 | C-15 | P. dentalis (NR029284) | 95 |
O-16 | P. histicola (NR044407) | 95 | C-16 | P. loescheii (NR043216) | 93 |
O-17 | P. dentalis (NR029284) | 95 | C-17 | P. salivae (NR024816) | 88 |
O-18 | St. pasteurianus (NR043660) | 100 | C-18 | Cp. utactus (NR044049) | 98 |
O-19 | P. dentalis (NR029284) | 96 | C-19 | D. acidaminovorans (NR029034) | 92 |
O-20 | P. dentalis (NR029284) | 96 | C-20 | D. acidaminovorans (NR029034) | 92 |
|  |  |  | C-21 | E. ruminantium (NR024661) | 93 |
|  |  |  | C-22 | G. esophilus (NR041450) | 91 |
|  |  |  | C-23 | P. copri (NR040877) | 92 |
|  |  |  | C-24 | Ca. cynodegmi (NR043063) | 88 |
|  |  |  | C-25 | P. copri (NR040877) | 93 |
|  |  |  | C-26 | P. dentalis (NR029284) | 94 |
|  |  |  | C-27 | B. uniformis (NR040866) | 94 |