Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups

Novais, Ângela; Vuotto, Claudia; Pires, João; Montenegro, Carolina; Donelli, Gianfranco; Coque, Teresa M; Peixe, Luísa

doi:10.1186/1471-2180-13-144

Table 1 Epidemiological data and diversity among ST69, ST393 and ST405 clonal groups

From: Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups

ST (N°)	Serotype	PFGE-type (Cluster)	Country (N° isolates)	Date	Origin^a	Source (N° isolates)	ESBL / AmpC	Antibiotic resistance profile^b	Virulence gene profile^b	Reference
69	O11, O73, O77	69_1 (I)	US (4), NW (1)	1999-2002	H	Urine (3), blood (2)		(Cm), Sm, Su, (Te), Tp, Ts	fimH,iha, iutA, kpsMTII, K5, traT, sat, (ompT), (fyuA), papA, papEF, papGII, papC,(papGIII), (iroN), (iss), (ireA)	[20, 21]
69	O77	69_2 (I)	SP (1)	-	H	Urine	-	Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII	[20]
69	-	69_3 (I)	BR (1)	-	H, C	-	-	(Ak), Cm, (Gm), (Km), (Nt), Sm, Su, (Tb), Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC	[12, 22]
69	-	69_3 (I)	NW (1)	2006	H, C	Urine	CMY-2	(Ak), Cm, (Gm), (Km), (Nt), Sm, Su, (Tb), Te, Tp, Ts		[12, 22]
69	-	69_4 (I)	PT (1)	2007	H	Urine	-	Cp, Na, Sm, Su, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, papEF, iroN, iss	This study
69	O17	69_5 (I)	US (1)	-	H	Blood	-	Cm, Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII	[20]
69	-	69_6 (II)	PT (2)	2010	S	-	-	Km, Sm, Su, Te, Tp, Ts	fimH, kpsMTII, K5, traT, ompT, papA, papEF, papC, papGIII, bmaE, gafD, iroN, iss	[23]
69	-	69_7 (II)	NW (1)	2002	A	Poultry meat	-	Sm, Su, Te, Ts	fimH, iutA, traT, ompT, papC, iroN, iss, tsh, ireA	[21]
393	O15	NA^c	US (1)	1980	H	-	-	-	fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII, tsh	[4]
393	O15	NA^d	US (1)	1998	H	-	-	Cm, Gm, Km, Nt, Sm, Su, Tb, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC	[4]
393	O15	NA^e	US (1)	1999	H	-		Cp, Km, Na, Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, sat, fyuA, papA, papEF, papGII, papC, tsh, papGI	[4]
393	O15	NA^e	KO (1)	2006-7	C	Urine	-	Cp, Gm, Km, Na, Nt, Sm, Su, Tb, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, K1, traT, sat, ompT, fyuA, papA, papEF, papGII, papC	[9]
393	O15	NA^e	FR (1)	2006	F	Feces	-	Cm, Cp, Gm, Km, Na, Nt, Sm, Su, Tb, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, papA, papEF, papGII, papC, iss, tsh	[24]
393	O25	NA	FR (1)	2006	F	Feces	-	Cp, Na, Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC, iss	[24]
393	O15	NA^e	FR (1)	2006	F	Feces	-	Cm, Cp, Gm, Km, Nt, Sm, Su, Tb, Te, Ts	fimH, iha, iutA, kpsMTII, K5, K1, traT, sat, fyuA, papA, papEF, papGII, papC, iss, tsh	[24]
393	O15	NA	SP (1)	2002	C	Urine	CTX-M-14	Cp, Na, Sm, Su, Ts	fimH, iha, iutA, kpsMTII, K5, sat, papA, papEF, papGII, papC, iss, tsh	[25]
393	O15	NA^e	KO (1)	2006-7	C	Urine	-	Cp, Km, Na, Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, papEF, papGII, papC	[9]
393	O15	NA^e	NW (1)	2005	H	Urine	CMY-2	Cp, Km, Na, Nf, Sm, Su, Tp, Ts	fimH, iutA, kpsMTII, K5, K1, ompT, fyuA, iss, tsh	[12]
2321	O25	NA^e	PT (1)	2008	H	Urine	TEM-like	Cp, Na, Sm, Su, Te, Tp, Ts	fimH, iha, iutA, kpsMTII, K5, K1, sat, fyuA, papGII, papC, papGIII, iss, tsh, malX, iroN	This study
405	-	405_1 (I)	SP (1), KU (1)^f NW (1)	2002-2004	H	Wound (1) Urine (1) Respiratory (1)	CTX-M-15 (2), CTX-M-3 (1)	(Cp), Cm, Gm, Km, Na, (Nt), Sm, Su, Tb, Te, Tp, Ts	FimH, (iha), iutA, (kpsMTII), traT, sat, (malX), fyuA, (kpsMTIII), (iss), (tsh)	[2, 12]
405	-	405_2 (I)	NW (1)	2003	H	Wound	CTX-M-14	Cm, Km, Sm, Su, Te, Tp, Ts	fimH, traT, malX, fyuA, kpsMTIII	[12]
405	-	405_3 (I)	NW (1) PT (1) ^f	2003-2006	H	Abcess (1) Urine (1)	CMY-2 (1) CTX-M-15 (1)	(Gm), (Km), Na, Sm, Su, (Tb), Te, Tp, Ts	fimH, (iha), iutA, (kpsMTII), traT, malX, fyuA, (papEF), (papGIII), (iroN), (iss), (tsh), (ireA)	[2, 12]
405	-	405_4 (II)	SW (1) SP (1)	2000-2005	H, C	Urine (1) Blood (1)	CTX-M-15 TEM-24	(Cm), Cp, (Gm), Km, Na, (Nt), Sm, Su, Te, Tb, Tp, Ts	(fimH), (iutA), traT, malX, fyuA, kpsMTIII, (iss), (tsh)	[2, 26]
405	-	405_5 (II)	SP (1)	2001	H	Wound	TEM-52	Cm, Cp, Gm, Km, Na, Sm, Su, Tb, Te, Ts	traT, fyuA, kpsMTIII	This study
405	-	NA	SP (1)	2008	C	Urine	CTX-M-15	Ak, Cp, Gm, Na, Tb, Ts	fimH, fyuA	[27]
964	-	405_7 (III)	NW (1)	2003	H	Respiratory	CTX-M-15	Cm, CpGm, Km, Na, Nf, Sm, Su, Tb, Te, Tp, Ts,	fimH, traT, sat, fyuA, papEF	[12]

^aH Hospitalized humans (obtained from representative outbreaks), C Community acquired infections (obtained from representative outbreaks), F Healthy humans (feces), A Animals, S Ready-to-eat salads. ^b Variability among isolates is represented in parenthesis. ^cIsolates identified as biotype A, ^dIsolates identified as biotype B; ^eIsolates identified as biotype C. ^f Isolate considered ExPEC. ND Not determined, NA, Not applicable, Ak Amikacin, Cm Chloramphenicol, Cp Ciprofloxacin, Gm Gentamicin, Km Kanamycin, Na Nalidixic acid, Nt Netilmicin, Nf Nitrofurantoin, Sm Streptomycin, Su Sulphonamides, Tb Tobramycin, Te Tetracyclin, Tp Trimethoprim, Ts Trimethoprim-Sulfamethoxazole, Definitions: fimH (type 1 fimbriae), papA (P fimbriae major subunit, pyelonephritis-associated), papC (P fimbriae assembly), papEF (P fimbriae minor tip pilins), papG allele I (papG variant), papG allele II (papG variant, pyelonephritis-associated), papG allele III (P fimbriae adhesion, cystitis-associated), sfa/focDE (S and F1C fimbriae), bmaE (Blood group M-specific adhesin), gafD (glucosamine-specific adhesin), iha (iron-regulated-gene-homologue adhesion), sat (secreted autotransporter toxin), tsh (serine protease autotransporter), fyuA (yersiniabactin receptor) iutA (ferric aerobactin receptor), iroN (catecholate siderophore receptor), ireA (Iron-regulated element ), kpsMTII (group II capsular polysaccharide), kpsMTII K1 (variant K1), kpsMTII K5 (variant K5), kpsMTIII (group III capsular polysaccharide), traT (serum survival associated), iss (increased serum survival), usp (uropathogenic-specific protein), ompT (outer membrane protease), malX (pathogenicity-associated island marker.

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