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Table 1 Epidemiological data and diversity among ST69, ST393 and ST405 clonal groups

From: Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups

ST (N°) Serotype PFGE-type (Cluster) Country (N° isolates) Date Origina Source (N° isolates) ESBL / AmpC Antibiotic resistance profileb Virulence gene profileb Reference
69 O11, O73, O77 69_1 (I) US (4), NW (1) 1999-2002 H Urine (3), blood (2)   (Cm), Sm, Su, (Te), Tp, Ts fimH,iha, iutA, kpsMTII, K5, traT, sat, (ompT), (fyuA), papA, papEF, papGII, papC,(papGIII), (iroN), (iss), (ireA) [20, 21]
69 O77 69_2 (I) SP (1) - H Urine - Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII [20]
69 - 69_3 (I) BR (1) - H, C - - (Ak), Cm, (Gm), (Km), (Nt), Sm, Su, (Tb), Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC [12, 22]
NW (1) 2006 Urine CMY-2
69 - 69_4 (I) PT (1) 2007 H Urine - Cp, Na, Sm, Su, Tp, Ts fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, papEF, iroN, iss This study
69 O17 69_5 (I) US (1) - H Blood - Cm, Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII [20]
69 - 69_6 (II) PT (2) 2010 S - - Km, Sm, Su, Te, Tp, Ts fimH, kpsMTII, K5, traT, ompT, papA, papEF, papC, papGIII, bmaE, gafD, iroN, iss [23]
69 - 69_7 (II) NW (1) 2002 A Poultry meat - Sm, Su, Te, Ts fimH, iutA, traT, ompT, papC, iroN, iss, tsh, ireA [21]
393 O15 NAc US (1) 1980 H - - - fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC, papGIII, tsh [4]
393 O15 NAd US (1) 1998 H - - Cm, Gm, Km, Nt, Sm, Su, Tb, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC [4]
393 O15 NAe US (1) 1999 H -   Cp, Km, Na, Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, sat, fyuA, papA, papEF, papGII, papC, tsh, papGI [4]
393 O15 NAe KO (1) 2006-7 C Urine - Cp, Gm, Km, Na, Nt, Sm, Su, Tb, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, K1, traT, sat, ompT, fyuA, papA, papEF, papGII, papC [9]
393 O15 NAe FR (1) 2006 F Feces - Cm, Cp, Gm, Km, Na, Nt, Sm, Su, Tb, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, traT, sat, ompT, papA, papEF, papGII, papC, iss, tsh [24]
393 O25 NA FR (1) 2006 F Feces - Cp, Na, Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, sat, ompT, fyuA, papA, papEF, papGII, papC, iss [24]
393 O15 NAe FR (1) 2006 F Feces - Cm, Cp, Gm, Km, Nt, Sm, Su, Tb, Te, Ts fimH, iha, iutA, kpsMTII, K5, K1, traT, sat, fyuA, papA, papEF, papGII, papC, iss, tsh [24]
393 O15 NA SP (1) 2002 C Urine CTX-M-14 Cp, Na, Sm, Su, Ts fimH, iha, iutA, kpsMTII, K5, sat, papA, papEF, papGII, papC, iss, tsh [25]
393 O15 NAe KO (1) 2006-7 C Urine - Cp, Km, Na, Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, papEF, papGII, papC [9]
393 O15 NAe NW (1) 2005 H Urine CMY-2 Cp, Km, Na, Nf, Sm, Su, Tp, Ts fimH, iutA, kpsMTII, K5, K1, ompT, fyuA, iss, tsh [12]
2321 O25 NAe PT (1) 2008 H Urine TEM-like Cp, Na, Sm, Su, Te, Tp, Ts fimH, iha, iutA, kpsMTII, K5, K1, sat, fyuA, papGII, papC, papGIII, iss, tsh, malX, iroN This study
405 - 405_1 (I) SP (1), KU (1)f NW (1) 2002-2004 H Wound (1) Urine (1) Respiratory (1) CTX-M-15 (2), CTX-M-3 (1) (Cp), Cm, Gm, Km, Na, (Nt), Sm, Su, Tb, Te, Tp, Ts FimH, (iha), iutA, (kpsMTII), traT, sat, (malX), fyuA, (kpsMTIII), (iss), (tsh) [2, 12]
405 - 405_2 (I) NW (1) 2003 H Wound CTX-M-14 Cm, Km, Sm, Su, Te, Tp, Ts fimH, traT, malX, fyuA, kpsMTIII [12]
405 - 405_3 (I) NW (1) PT (1) f 2003-2006 H Abcess (1) Urine (1) CMY-2 (1) CTX-M-15 (1) (Gm), (Km), Na, Sm, Su, (Tb), Te, Tp, Ts fimH, (iha), iutA, (kpsMTII), traT, malX, fyuA, (papEF), (papGIII), (iroN), (iss), (tsh), (ireA) [2, 12]
405 - 405_4 (II) SW (1) SP (1) 2000-2005 H, C Urine (1) Blood (1) CTX-M-15 TEM-24 (Cm), Cp, (Gm), Km, Na, (Nt), Sm, Su, Te, Tb, Tp, Ts (fimH), (iutA), traT, malX, fyuA, kpsMTIII, (iss), (tsh) [2, 26]
405 - 405_5 (II) SP (1) 2001 H Wound TEM-52 Cm, Cp, Gm, Km, Na, Sm, Su, Tb, Te, Ts traT, fyuA, kpsMTIII This study
405 - NA SP (1) 2008 C Urine CTX-M-15 Ak, Cp, Gm, Na, Tb, Ts fimH, fyuA [27]
964 - 405_7 (III) NW (1) 2003 H Respiratory CTX-M-15 Cm, CpGm, Km, Na, Nf, Sm, Su, Tb, Te, Tp, Ts, fimH, traT, sat, fyuA, papEF [12]
  1. aH Hospitalized humans (obtained from representative outbreaks), C Community acquired infections (obtained from representative outbreaks), F Healthy humans (feces), A Animals, S Ready-to-eat salads. b Variability among isolates is represented in parenthesis. cIsolates identified as biotype A, dIsolates identified as biotype B; eIsolates identified as biotype C. f Isolate considered ExPEC. ND Not determined, NA, Not applicable, Ak Amikacin, Cm Chloramphenicol, Cp Ciprofloxacin, Gm Gentamicin, Km Kanamycin, Na Nalidixic acid, Nt Netilmicin, Nf Nitrofurantoin, Sm Streptomycin, Su Sulphonamides, Tb Tobramycin, Te Tetracyclin, Tp Trimethoprim, Ts Trimethoprim-Sulfamethoxazole, Definitions: fimH (type 1 fimbriae), papA (P fimbriae major subunit, pyelonephritis-associated), papC (P fimbriae assembly), papEF (P fimbriae minor tip pilins), papG allele I (papG variant), papG allele II (papG variant, pyelonephritis-associated), papG allele III (P fimbriae adhesion, cystitis-associated), sfa/focDE (S and F1C fimbriae), bmaE (Blood group M-specific adhesin), gafD (glucosamine-specific adhesin), iha (iron-regulated-gene-homologue adhesion), sat (secreted autotransporter toxin), tsh (serine protease autotransporter), fyuA (yersiniabactin receptor) iutA (ferric aerobactin receptor), iroN (catecholate siderophore receptor), ireA (Iron-regulated element ), kpsMTII (group II capsular polysaccharide), kpsMTII K1 (variant K1), kpsMTII K5 (variant K5), kpsMTIII (group III capsular polysaccharide), traT (serum survival associated), iss (increased serum survival), usp (uropathogenic-specific protein), ompT (outer membrane protease), malX (pathogenicity-associated island marker.