From: Metaproteomic analysis of ratoon sugarcane rhizospheric soil
Spot no. a) | GI no. b) | Protein name | Score (PMF) c) | PMF/Coveraged) | MW/ pIe) | Score (MS-MS) f) | Pept g) | Species | Function h) | RS/ CK i) | RS/ NS j) |
---|---|---|---|---|---|---|---|---|---|---|---|
12 | gi|115470493 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | 106 | 20/34% | 69494/6.61 | 185 | 3 | Oryza sativa | TCA | 1.9 | 1.9 |
13 | gi|115467370 | Phosphofructokinase | 130 | 18/38% | 61907/6.01 | 251 | 4 | Oryza sativa | EMP | 1.7 | 1.7 |
16 | gi|115459078 | Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 | 117 | 14/51% | 36921/6.34 | 122 | 2 | Oryza sativa | EMP | 1.6 | 1.5 |
18 | gi|115480019 | Proteasome beta type-1 | 136 | 11/50% | 24608/6.43 | 92 | 2 | Oryza sativa | Protein degradation | 0.8 | 1.5 |
23 | gi|51090388 | Putative PrMC3 | 107 | 16/59% | 34540/5.61 | 296 | 3 | Oryza sativa | Stress/defense response | 1.6 | 1.7 |
25 | gi|115111257 | Betaine aldehyde dehydrogenase | 86 | 10/31% | 55361/5.29 | 276 | 4 | Oryza sativa | Amino acid metabolism | 2.2 | 2.2 |
26 | gi|115464537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 127 | 20/42% | 61003/5.25 | 361 | 5 | Oryza sativa | EMP | 2.0 | 1.0 |
27 | gi|115448989 | Heat shock 70 kDa protein, mitochondrial precursor | 96 | 19/34% | 73081/5.49 | 456 | 4 | Oryza sativa | Stress/defense response | 2.3 | 2.2 |
28 | gi|54606800 | NADP dependent malic enzyme | 84 | 24/37% | 65824/5.79 | 193 | 3 | Oryza sativa | Pyruvate metabolism | 2.1 | 2.1 |
29 | gi|115477952 | Cyclase family protein | 80 | 11/39% | 29792/5.32 | 115 | 2 | Oryza sativa | Signal transduction | 2.4 | 1.0 |
31 | gi|115440691 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 189 | 30/50% | 60980/5.42 | 500 | 4 | Oryza sativa | EMP | 1.1 | 1.7 |
32 | gi|108708038 | Fumarate hydratase 1, mitochondrial precursor, putative, expressed | 124 | 13/27% | 53991/6.93 | 210 | 4 | Oryza sativa | TCA | 1.8 | 1.6 |
35 | gi|968996 | Glyceraldehyde-3-phosphate dehydrogenase | 139 | 14/50% | 36641/6.61 | 379 | 3 | Oryza sativa | EMP | 1.7 | 1.5 |
37 | gi|3024122 | S-adenosylmethionine synthase 2 | 100 | 18/60% | 43330/5.60 | 405 | 4 | Oryza sativa | Amino acid metabolism | 0.4 | 0.6 |
1 | gi|1203832 | Beta-D-glucan exohydrolase, isoenzyme ExoII | Â | Â | 67835/7.96 | 153 | 2 | Hordeum vulgare | Glycan metabolism | 4.0 | 1.5 |
4 | gi|3868754 | Catalase | Â | Â | 57052/6.49 | 147 | 2 | Oryza sativa | Stress/defense response | 2.9 | 1.7 |
21 | gi|115455455 | UDP-glucose 6-dehydrogenase | Â | Â | 53435/5.79 | 208 | 3 | Oryza sativa | Glycan metabolism | 1.5 | 1.0 |
33 | gi|38605779 | NAD-dependent isocitrate dehydrogenase | Â | Â | 36882/5.77 | 221 | 3 | Oryza sativa | TCA | 1.8 | 1.0 |
2 | gi|226357624 | Putative sugar ABC transporter, periplasmic component | 84 | 10/33% | 46676/9.68 | Â | Â | Deinococcus deserti | Membrane transport | 3.0 | 1.6 |
3 | gi|241957693 | Mitochondrial N-glycosylase/DNA lyase | 74 | 11/39% | 40573/8.46 | Â | Â | Candida dubliniensis | Nucleotide metabolism | 3.1 | 1.9 |
5 | gi|254399905 | ABC transporter ATP-binding subunit | 82 | 18/31% | 66963/5.53 | Â | Â | Streptomyces sviceus | Membrane transport | 2.0 | 1.5 |
6 | gi|126662203 | Oxidoreductase | 74 | 13/20% | 76867/8.83 | Â | Â | Flavobacteria bacterium | Oxidation reduction | 2.4 | 1.7 |
7 | gi|261195979 | ORP1 | 74 | 10/39% | 36747/9.48 | Â | Â | Ajellomyces dermatitidis | Signal transduction | 1.6 | 1.5 |
8 | gi|238481813 | ADP-ribosylglycohydrolase | 84 | 18/28% | 49119/6.02 | Â | Â | Aspergillus flavus | Signal transduction | 1.0 | 0.5 |
9 | gi|261854741 | Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | 85 | 9/41% | 26805/4.63 | Â | Â | Halothiobacillus neapolitanus | Amino acid metabolism | 0.6 | 0.6 |
10 | gi|115456914 | Elongation factor EF-2 | 101 | 23/31% | 94939/5.85 | Â | Â | Oryza sativa | Protein metabolism | 4.6 | 2.3 |
11 | gi|219667596 | Radical SAM domain protein | 82 | 11/46% | 38272/5.24 | Â | Â | Desulfitobacterium hafniense | Diverse reaction | 2.3 | 2.5 |
14 | gi|111024023 | Acyl-CoA dehydrogenase | 87 | 13/37% | 41071/5.40 | Â | Â | Rhodococcus jostii | Amino acid metabolism | 2.8 | 1.9 |
15 | gi|23009750 | Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit | 87 | 7/92% | 6114/4.52 | Â | Â | Magnetospirillum magnetotacticum | TCA | 1.9 | 1.0 |
17 | gi|253988359 | Phosphoglycerate kinase | 83 | 9/33% | 41652/5.19 | Â | Â | Photorhabdus asymbiotica | EMP | 0.6 | 1.0 |
19 | gi|94497581 | Electron-transferring-flavoprotein dehydrogenase | 84 | 9/25% | 61194/5.66 | Â | Â | Sphingomonas sp. | Energy metabolism | 0.5 | 0.6 |
20 | gi|85110870 | Related to kinesin-like protein | 74 | 26/21% | 195364/5.31 | Â | Â | Neurospora crassa | Cytoskeleton protein | 2.0 | 2.0 |
22 | gi|194366013 | Nitrate reductase, alpha subunit | 71 | 19/16% | 140507/5.98 | Â | Â | Stenotrophomonas maltophilia | Nitrogen metabolism | 1.9 | 1.1 |
24 | gi|21492793 | Conjugal transfer protein A | 91 | 24/19% | 171793/6.93 | Â | Â | Rhizobium etli | Bacterial conjugation | 2.1 | 1.0 |
30 | gi|219664364 | Two-component system sensor kinase | 87 | 19/15% | 176010/6.50 | Â | Â | Rhodococcus sp. | Signal transduction | 3.0 | 1.6 |
34 | gi|126135008 | Isocitrate dehydrogenase [NADP], mitochondrial precursor | 76 | 14/32% | 48355/8.21 | Â | Â | Pichia stipitis | TCA | 1.7 | 1.7 |
36 | gi|52426030 | MrcA protein | 90 | 18/25% | 96552/6.40 | Â | Â | Mannheimia succiniciproducens | Glycan metabolism | 1.6 | 1.0 |
38 | gi|148685933 | Tubulin, gamma complex associated protein 2 | 90 | 18/29% | 89598/6.52 | Â | Â | Mus musculus | Cytoskeleton protein | 0.6 | 0.9 |