Table 1 DNA fragments recovered from GD.EMSA and genes potentially regulated by ChvI
From: Members of the Sinorhizobium meliloti ChvI regulon identified by a DNA binding screen
Fragment | Size | Genomic origin | Position | Gene | Function | |
|---|---|---|---|---|---|---|
| Â | (bp) | From | To | Inter/intra-genic | Â | (location) |
| Â | Â | Chromosome | Â | Â | Â | |
F1 | 129 | 60821 | 60949 | intra | SMc02574 (hisB) | probable imidazoleglycerol-phosphate dehydratase |
F2 | 304 | 654156 | 654459 | intra | SMc02281 | Â |
F3 | 595 | 1085493 | 1086087 | intra | SMc00051 (phaA2) | probable Na(+)/H(+)-antiporter (upstream mucR) |
F4 | 152 | 1183131 | 1183282 | intra | SMc02637 | (upstream lpsL and rkpK) |
F5 | 139 | 1220301 | 1220439 | intra | SMc00550 | ABC transporter ATP-binding transmembrane protein (upstream psd and pssA) |
F6 | 142 | 1260626 | 1260767 | intra | SMc00589 | (upstream gal) |
F7 | 145 | 1639710 | 1639854 | intra | SMc02076 (cls) | putative cardiolipin synthetase transmembrane protein (downstream exoR; upstream xthA2) |
F8 | 236 | 1830765 | 1831000 | intra | SMc00262 | putative 3-ketoacyl-CoA thiolase |
F9 | 166 | 2587012 | 2587177 | intra | SMc02733 | Â |
F10 | 256 | 2991422 | 2991677 | intra | SMc03993 | Â |
F11 | 128 | 3117150 | 3117277 | intra | SMc03159 (metN) | methionine import ATP-binding protein |
F12 | 288 | 3303566 | 3303853 | intra | SMc02491 | Â |
F13 | 184 | 3383057 | 3383240 | inter | SMc03267 | putative dipeptidase (upstream ABC transporter) |
F14 | 143 | 3412878 | 3413020 | inter | SMc03297 | Â |
| Â | Â | pSymB | Â | Â | Â | Â |
F15 | 184 | 1266 | 1449 | inter & intra | SMb21653 (lacF) | lactose ABC transporter, permease component |
F16 | 148 | 43628 | 43775 | inter | SMb20032 | Â |
F17 | 150 | 132970 | 133119 | inter | SMb20119 | putative site-specific recombinase |
F18 | 97 | 221089 | 221185 | intra | SMb20213 | (upstream SMb20214) |
F19 | 67 | 492546 | 492612 | intra | SMb20478 | putative dipeptide ABC transporter permease and ATP-binding protein |
F20 | 143 | 938297 | 938439 | intra | SMb21188 | putative acyltransferase (msbA2 operon) |
F21 | 141 | 1091213 | 1091353 | intra & inter | SMb21151 /SMb21552 (aacC4) | putative aminoglycoside 6′-N-acetyltransferase |
F22 | 221 | 1588216 | 1588436 | intra | SMb20574 | putative maltodextrin α-D-glucosyltransferase |
F23 | 145 | 1634582 | 1634726 | intra | SMb20615 (thiC) | thiamine biosynthesis protein |
| Â | Â | pSymA | Â | Â | Â | Â |
F24 | 220 | 1186198 | 1186417 | intra | SMa2103 | oxidoreductase |
F25 | 212 | 1278398 | 1278609 | intra | SMa2295 | penicillin-binding protein |
F26 | 94 | 1305222 | 1305315 | intra | SMa2337 (rhtX) | rhizobactin transporter |
F27 | 148 | 1305714 | 1305861 | intra | SMa2337 (rhtX) | rhizobactin transporter |