Skip to main content

Table 4 Primers used in this study

From: The non-pathogenic Escherichia coli strain W secretes SslE via the virulence-associated type II secretion system beta

Name

Description

Application

gspKO-up

GACAATCTTTTAATACAGACAAAGAGCATCTGCGAAAAATTGTACGCGGGATTCCGGGGATCCGTCGACC

gspC-M deletion

gspKO-dn

CGCCACGTTAACGAGAGTAATTTTATTGATACTAATCTCCTGATACTTTATGTAGGCTGGAGCTGCTTCG

gspC-M deletion

pppAKO-dn

ATACACTTGCAGGCCCGCATCCGGCAAGTTACAACAAACAACCTTTAACCATTCCGGGGATCCGTCGACC

pppA deletion

pppAKO-dn

TTATTAATAAGAGTTAAAATGTCACTTTGATAATGACGTTGTTATCATTATGTAGGCTGGAGCTGCTTCG

pppA deletion

sslEKO-up

TTTCTCCCAGTTACGAATTTTTTAACATTGTTTTGTCACTTGCGTTATTAATTCCGGGGATCCGTCGACC

sslE deletion

sslEKO-dn

TTATTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATACAGGATTATGTAGGCTGGAGCTGCTTCG

sslE deletion

pppA-up

TTATTAGGTACCATGCTTTTTGATGTTTTTCAGC

pppA cloning

pppA-dn

ATATTAGGATCCTTAAAACAATGCCTGTAGATAAATTG

pppA cloning

sslE-up

TTATTAGGTACCATGAATAAGAAATTTAAATATAAGAAATCG

sslE cloning

sslE-noSP-up

TTATTAGGTACCATGTCTTCCTCCGATACG

sslE-SP cloning

sslE-dn

TTATTAGGATCCTTACTCGACAGACATCTTATG

sslE cloning

sslE-dn-nostop

TTATTAGGATCCGCTCTCGACAGACATCTTATG

sslE cloning for fusions

cel45A-noSP-up

TTATTAGGATCCGCAGTTTGTGAATATCGTGTTACC

sslE-cel45A fusion

cel45A-dn

TTATTAAAGCTTTTACGGGCAGGTATTACGAATATC

sslE-cel45A fusion

pel10A-noSP-up

TTATTAGGATCCGCCTGCAGTTACAAGGTCAC

sslE-pel10A fusion

pel10A-dn

TTATTAAAGCTTTTACAGGTAACCCACTTTCTGG

sslE-pel10A fusion