Skip to main content

Table 2 Taxonomical assignment of cloned 16S rRNA amplicons from the midgut content of Cansiliella servadeii

From: A unique midgut-associated bacterial community hosted by the cave beetle Cansiliella servadeii(Coleoptera: Leptodirini) reveals parallel phylogenetic divergences from universal gut-specific ancestors

OTU # Taxonomy Clone and GenBank Code Top database similarities (%)1 Habitat2
1 Firmicutes 7B, (JQ308118) (92.4) Unc3. bacterium AB606297 Mouse faeces
(92.1) Unc. Clostridiaceae AB088980 Reticulitermes speratus gut (Isoptera: Termitidae)
43A;14B; 9B; 33C, (JQ308112, JQ308119, JQ308111, JQ308113) (92.6) Unc. bacterium AB606297 Mouse faeces
(92.4) Unc. bacterium DQ815954 Mouse cecum
(92.3) Unc. Clostridiaceae AB088980 R. speratus gut
19B; 23C; 25C; 28C; 39C, 50B, 53B, 57B, 73A, 74A (JQ308115, JQ308116, JQ308110, JQ308114, JQ308117, JX463078, JX463086, JX463088, JX463089), JX463090 (92.9) Unc. bacterium AB606297 Mouse faeces
(92.6) Unc. Clostridiaceae AB088980 R. speratus gut
41A, (JQ308120) (93.1) Unc. bacterium AB606297 Mouse faeces
(92.9) Unc. bacterium DQ815954 Mouse cecum
(92.8) Unc. Clostridiaceae AB088980 R. speratus gut
49B (JX463074) (92.9) Unc. bacterium AB606297 Mouse faeces
(92.6) Unc. bacterium DQ815954 Mouse cecum
(92.5) Unc. Clostridiaceae AB088980 R. speratus gut
2 Firmicutes 10B, (JQ308121) (92.3) Unc. bacterium EF602946 Mouse cecum
3 Firmicutes 4A; 42A, (JQ308123, JQ308124) (95.9) Unc. Clostridiales AB088981 R. speratus gut
(94.4) Unc. bacterium GU451010 Tipula abdominalis gut (Diptera: Tipulidae)
67A, 72A (JX463084, JX463085) (94.8) Unc. Clostridiales AB088981 R. speratus gut
8B, (JQ308122) (95.5) Unc. bacteriumEF608549 Poecilus chalcites gut (Coleoptera: Carabidae)
4 Firmicutes 32C, (JQ308126) (95.2) Unc. Clostridiaceae AB192046 Microcerotermes spp. gut (Isoptera: Termitidae)
48A, 68A, 75A (JQ308127, JX463080, JX463091) (95.7) Unc. bacterium AJ852374 Melolontha melolontha gut (Coleoptera: Scarabaeidae)
5 Firmicutes 21C, (JQ308125) (94,5) Unc. bacterium FJ374218 Pachnoda spp. gut (Coleoptera: Scarabaeidae)
6 Firmicutes 2A;12B, (JQ308128, JQ308129) (97.1) Unc. Clostridiaceae AB192046 Microcerotermes spp. gut (Isoptera: Termitidae)
6B, (JQ308130) (96.9) Unc. bacterium FJ374218 Pachnoda spp. larval gut (Coleoptera: Scarabaeidae)
46A, 63A (JQ308131, JX463079) (94.5) Unc. bacterium FJ374218 Pachnoda spp. gut (Coleoptera: Scarabaeidae)
7 Firmicutes 15B, (JQ308133) (91.7) Unc. bacterium EU465991 African elephant faeces
(90.5) Unc. bacterium AY654956 Chicken gut
29C, (JQ308132) (91.9) Unc. bacterium EU465991 African elephant faeces
(90.7) Unc. bacterium AY654956 Chicken gut
8 Firmicutes 5A, (JQ308134) (93.8) Unc. Clostridiales AB231035 Hodotermopsis sjoestedti gut (Isoptera: Termitidae)
9 Firmicutes 69A (JX463081) (94.7) Unc. bacterium AB088973 R. speratus gut
10 Firmicutes 71A(JX463087) (92.7) Unc. bacterium AB088973 R. speratus gut
11 Firmicutes 24C, 30C, (JQ308135, JQ308136) (92.6) Unc. Firmicutes GQ275112 Leptogenys spp. gut (Hymenoptera: Formicidae)
12 Actinobacteria 61A (JX463076) (93.2) Unc. Bacterium FR687129 Paddy soil
13 Actinobacteria 22C; 36C, 51B, 54B (JQ308137, JQ308138, JX463075, JX463083) (97.2) Unc. bacterium DQ521505 Lake Vida ice cover
(96.9) Unc. bacterium AM940404 Rhagium inquisitor gut (Coleoptera: Cerambycidae)
52B (JX463077) (96.7) Unc. bacterium DQ521505 Lake Vida, ice cover
(96.5) Unc. bacterium AM940404 Rhagium inquisitor gut (Coleoptera: Cerambycidae)
65A (JX463082) (97) Unc. bacterium DQ521505 Lake Vida, ice cover
(96.7) Unc. bacterium AM940404 Rhagium inquisitor gut (Coleoptera: Cerambycidae
14 Actinobacteria 45A, (JQ308139) (99.5) Sanguibacter inulinus HQ326836 Thorectes lusitanicus gut (Coleoptera: Geotrupidae)
15 α-Proteobacteria 13B, (JQ308142) (96.2) Unc. α-proteobacterium CU920098 Mesophilic anaerobic digester treating wastewater sludge
  (93.7) Unc. bacterium FN659093 Lumbricus terrestris gut
16 α-Proteobacteria 58B (JX463098) (100) Brevundimonas sp.JQ316297 Soil
17 α-Proteobacteria 44A (JQ308143) (92.5) Unc. bacterium EF667926 Epithelium Hydra vulgaris
(88.2) Unc. bacterium HM779996 Adult zebrafish gut
(87.9) Unc. bacterium EU148629 Agrilus planipennis gut (Coleoptera: Buprestidae)
18 δ-Proteobacteria 3A; 20A, 62A (JQ308144, JQ308145, JX463096) (94.3) Unc. δ-proteobacterium DQ307712 Macrotermes michaelsenigut (Isoptera: Termitidae)
19 δ-Proteobacteria 60B (JX463100) (96) Unc. Desulfovibrionaceae JN653048 Gut of millipede Tachypodoiulus niger
20 δ-Proteobacteria 66A, 70A (JX463092, JX463093) (94.1) Unc. bacterium FJ374259 P. ephippiata gut (Coleoptera: Scarabaeidae)
21 β-Proteobacteria 27C, (JQ308141) (95.2) Unc.bacterium AJ852369 Melolontha melolontha gut (Coleoptera: Scarabaeidae)
22 β-Proteobacteria 26C, (JQ308140) (96.5) Burkholderiales bacterium EU073950 Dermolepida albohirtum gut (Coleoptera: Scarabaeidae)
23 Bacteroidetes 11B, (JQ308146) (91.9) Unc. bacterium AJ576327 Pachnoda ephippiata gut (Coleoptera: Scarabaeidae)
18B, (JQ308147) (92.1) Unc. bacterium HQ728219 Microbial fuel cell
(91.9) Unc. bacterium AJ576327 P. ephippiata gut (Coleoptera: Scarabaeidae)
24 Bacteroidetes 16B, (JQ308148) (92.5) Unc. bacterium FJ674429 Cattle feedlot
(91.9) Unc. Bacteroidetes AB522123 R. santonensis gut (Isoptera: Termitidae)
(89.2) Unc. bacterium EF176896 Tipula abdominalis gut (Diptera: Tipulidae)
25 Bacteroidetes 35C, (JQ308149) (96.2) Unc. bacterium AJ576327 P. ephippiata gut (Coleoptera: Scarabaeidae)
26 Bacteroidetes 64A (JX463097) (94.2) Unc. bacterium HQ728219 Anode of a glucose-fed microbial fuel cell
(93.7) Unc. bacterium AJ576361 P. ephippiata gut (Coleoptera: Scarabaeidae)
27 Bacteroidetes 31C, (JQ308150) (93.1) Unc. bacterium DQ447343 Urban biowaste
(89.3) Elizabethkingia sp. GU45829 R. speratus gut (Isoptera: Termitidae)
40C, (JQ308151) (92.8) Unc. bacterium DQ447343 Urban biowaste
(89.2) Unc. Bacteroidetes HM215036 Bumble bee gut (Hymenoptera: Apidae)
28 Bacteroidetes 17B; 37C; 34C, 59B (JQ308154, JQ308155, JQ308153, JX463099) (94.9) Unc. Bacteroidetes DQ837639 Apis mellifera gut (Hymenoptera: Apidae)
55B (JX463095) (94.6) Unc. Bacteroidetes DQ837639 Apis mellifera gut (Hymenoptera: Apidae)
56B (JX463094) (94.8) Unc. Bacteroidetes DQ837639 Apis mellifera gut (Hymenoptera: Apidae)
29 Bacteroidetes 38C, (JQ308152) (94.3) Unc. Bacteroidetes DQ837639 Apis mellifera gut (Hymenoptera: Apidae)
  1. 1Description of GenBank subjects displaying the top-scoring BLAST alignment results of sequence similarity.
  2. 2Animal host or other environment in which the subject having homology with the present sequence is described in GenBank records.
  3. 3Unc. = ‘Uncultured’.
  4. OTUs are defined at 97% similarity threshold. Clones ID are followed by letters A,B or C to identify the three insect guts specimens.