Skip to main content

Table 2 List of unigenes presenting statistically different representations in AO and SO libraries.

From: Host gene response to endosymbiont and pathogen in the cereal weevil Sitophilus oryzae

Accession numbers 1 R Unigene length (pb) 2 Redundancy in AO 2 Redundancy in SO 3 1st blastx result on Tribolium Castaneum 3 Accession 3 e-value 3 Coverage 3 Max identity 4 InterProScan predicted domain
FQ866673 16.45 664 24 103 allergen aca S13 (cellular FABP-like) XP_969762 6e-05 50% 32% IPR011038; IPR012674
FQ866935, FQ867818 15.91 1307 304 440 NA NA NA NA NA no IPR
FQ877624 5.21 723 21 0 NA NA NA NA NA No IPR
FQ884311 3.22 351 13 0 RPL37 XP_969650 3e-36 76% 94% IPR001569; IPR011331; IPR011332; IPR018267
FQ868370 2.9 525 17 1 Chemosensory protein 10 NP_001039278 6e-33 75% 49% IPR005055
FQ862292 2.9 974 17 1 Cathepsin L-like proteinase NP_001163996 2e-68 88% 48% no IPR
FQ869260 2.73 138 11 0 NA NA NA NA NA No IPR
FQ865010 2.49 865 12 28 Gamma-subunit. methylmalonyl-CoA decarboxylase XP_973308 2e-24 54% 58% IPR010625
FQ884611, FQ867701 2.48 1463 10 0 Myoinositol oxygenase XP_966469 3e-133 6% 74% IPR007828
FQ864415 2.17 704 0 6 Transmembrane protein 41B XP_975236 1.8e-02 25% 42% No IPR
FQ863216 2.17 812 0 6 NA NA NA NA NA no IPR
  1. 1The R statistic test, with 500 random datasets, was performed to evaluate genes whose representation in AO and SO libraries was statistically different. Sequences showing an R statistic > 2 were significant.
  2. 2Unigene redundancy is given for each library (AO and SO).
  3. 3For each unigene, we gave blastx matches with Tribolium castaneum, the closest genome-sequenced insect, phylogenetically, to Sitophilus. Accession numbers of Tribolium related sequences, e-value of blastx hits, sequences coverage and max identity between Sitophilus and Tribolium sequences are also given.
  4. 4Interproscan predicted domains are given to complete the characterization of sequences.