Time | KEGG cellular pathway name | IF | GO up-regulated genes | GO down-regulated genes |
---|---|---|---|---|
0.5 | No significant genes | Â | No significant genes | No significant genes |
1 | Epithelial cell signaling in Helicobacter pylori infection | 16.6 | No significant GO | No significant genes |
 | Cytokine-cytokine receptor interaction | 8.1 |  |  |
 | Bladder cancer | 7.5 |  |  |
 | Toll-like receptor signaling pathway | 6.6 |  |  |
 | Base excision repair | 6.0 |  |  |
 | Primary immunodeficiency | 5.9 |  |  |
 | Pathways in cancer | 5.4 |  |  |
3 | Epithelial cell signaling in Helicobacter pylori infection | 17.8 | anti-apoptosis | No significant GO |
 | Pathways in cancer | 16.9 | regulation of retroviral genome |  |
 | Small cell lung cancer | 14.2 | replication |  |
 | MAPK signaling pathway | 14.2 | T-helper 1 cell differentiation |  |
 | Apoptosis | 12.5 | negative regulation of LPS-mediated signaling pathway |  |
 | Adipocytokine signaling pathway | 12.3 | negative regulation of smooth muscle cell migration |  |
 | Prostate cancer | 11.4 | regulation of MAP kinase activity chemotaxis |  |
 | Toll-like receptor signaling pathway | 11.1 | protein amino acid dephosphorylation |  |
 | T cell receptor signaling pathway | 10.5 | neutrophil activation |  |
 | B cell receptor signaling pathway | 9.9 | entrainment of circadian clock |  |
6 | Phosphatidylinositol signaling system | 32.2 | anti-apoptosis | No significant GO |
 | Epithelial cell signaling in Helicobacter pylori infection | 15.5 | regulation of retroviral genome |  |
 | Small cell lung cancer | 14.2 | replication |  |
 | Pathways in cancer | 12.4 | T-helper 1 cell differentiation |  |
 | Apoptosis | 11.6 | neutrophil activation |  |
 | Adipocytokine signaling pathway | 10.1 | negative regulation of I-kappaB |  |
 | Toll-like receptor signaling pathway | 8.9 | kinase/NF-kB cascade |  |
 | MAPK signaling pathway | 8.7 | induction of positive chemotaxis |  |
 | Bladder cancer | 8.5 | myeloid dendritic cell differentiation |  |
 | B cell receptor signaling pathway | 8.3 |  |  |
12 | Leukocyte transendothelial migration | 309.7 | cell cycle arrest | response to unfolded protein |
 | Cell adhesion molecules (CAMs) | 75.4 | amino acid transport | S-adenosylmethionine biosynthetic process |
 | DNA replication | 25.0 | positive regulation of transcription |  |
 | Cell cycle | 20.0 | response to stress |  |
 | Pathways in cancer | 19.4 | regulation of MAP kinase activity |  |
 | p53 signaling pathway | 17.0 |  |  |
 | Antigen processing and presentation | 15.7 |  |  |
 | MAPK signaling pathway | 13.2 |  |  |
 | Small cell lung cancer | 12.2 |  |  |
 | Circadian rhythm | 11.9 |  |  |
24 | Leukocyte transendothelial migration | 80.3 | keratinocyte differentiation | cholesterol biosynthetic process |
 | Cell cycle | 24.4 | amino acid transport | response to unfolded protein |
 | p53 signaling pathway | 20.9 | keratinization | isoprenoid biosynthetic process |
 | Circadian rhythm | 18.6 | angiogenesis | creatine biosynthetic process |
 | DNA replication | 18.0 | apoptosis | response to oxidative stress |
 | Adherens junction | 16.1 | response to stress |  |
 | Pathways in cancer | 14.9 | cell cycle arrest |  |
 | Nucleotide excision repair | 14.3 | pyrimidine nucleotide metabolic |  |
 | Ubiquitin mediated proteolysis | 14.2 | process |  |
 | Phosphatidylinositol signaling system | 13.7 | induction of positive chemotaxis |  |