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Table 2 Pan genomes of different Ureaplasma species sets

From: Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvumstrains

 

All 19 strains

14 ATCC serovars

U. urealyticum (14 strainsa)

U. parvum (5 strainsb)

Pan genome

1020

971

938

688

Core genome

515

523

553

538

Singletons

262

246

216

77

Clusters of Orthologous Genes(COGs)

758

725

722

688

  1. Pan genome represents the number of clusters of orthologous genes and singletons. Singletons are genes found only in one of the genomes. Clusters of Orthologous Genes (COGs) have genes orthologous among at least 2 genomes.
  2. a) ATCC UUR2, UUR4, UUR5, UUR7-13, and the clinical isolates 2033, 2608, 4155, 4318.
  3. b) ATCC UPA1, UPA3 (ATCC 27815), UPA3 (ATCC 700970), UPA6, UPA14.