Table 1 The results of PerR regulon’s identification
Predicted target genesa | Gene names | Function of genes | Predicted PerR-box NTANAANNATTNTAN | qRT-PCRb | EMSA results |
|---|---|---|---|---|---|
SSU05_0022 |  | aromatic amino acid aminotransferase | ATAAAACTATTATAA | −2.5 (0.6) |  |
SSU05_0209 | Â | hypothetical protein | CTATAATCATTTTAT | +1.1 (0.2) | Â |
SSU05_0308 |  | hypothetical protein | GTAAAATTATTATAA | −1.1 (0.1) |  |
SSU05_0309 | pmtA | cation transport ATPase | TTAGAATTATTATAA TTATAACGATTATAA | −1.1 (0.1) | negative |
SSU05_0618 |  | MATE efflux family protein | TTAAAATAATTATAA | −4.2 (1.1) |  |
SSU05_1264 |  | SAM-dependent methyltransferase | ATAGAATTATTATAA | −1.1 (0.3) |  |
SSU05_1265 |  | sulfatase | ATAGAATTATTATAA | −1.8 (0.3) |  |
SSU05_1341 | lacI | LacI family transcriptional regulator | TTAGAATCATTCTAG | −1.8 (0.4) |  |
SSU05_1689 | dpr | peroxide resistance protein | TTATAATTATTATAA | +9.3 (1.1) | positive |
SSU05_1691 |  | phosphotyrosine protein phosphatase | TTATAATTATTATAA | −1.7 (0.4) |  |
SSU05_1771 | metQ | lipoprotein transporter | ATACAATGATTGTAA | +4.0 (0.2) | positive |
SSU05_1855 | escA | ABC transporter ATP-binding protein | ATATAATTATTATAA | −16.1 (5.2) |  |
SSU05_1856 |  | HIT-family protein | ATATAATTATTATAA | −1.6 (0.4) |  |
SSU05_2094 | relA | GTP pyrophosphokinase | GTATAATGATTGTAG | +2.1 (0.6) | negative |
SSU05_2095 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | GTATAATGATTGTAG | −3.0 (1.1) |  |
SSU05_2112 |  | hypothetical protein | GTATAATGATTATAC | −1.5 (0.6) |  |
SSU05_2113 | rarA | recombination factor protein | GTATAATGATTATAC | +1.7 (0.5) | Â |
SSU05_2191 | rlmH | rRNA large subunit methyltransferase | ATAAAATAATTGTAA | −1.3 (0.3) |  |
SSU05_2192 | htrA | trypsin-like serine protease | ATAAAATAATTGTAA | +1.2 (0.3) | Â |