Spot ID | NCBI ID | Gene | Protein description | Organism (best match) | T/E1 pI | T/E1 mass (Da) | Fold change ratio2 | p-value | Cellular location |
---|---|---|---|---|---|---|---|---|---|
Metabolism | |||||||||
C - Energy production and conversion | |||||||||
1 | gi|46909738 | icd | Isocitrate dehydrogenase | Rhizobium leguminosarum | 5.9/5.96 | 45320/49000 | ↑1.00 | - | Cytoplasmic |
2 | gi|222087461 | sucC | Succinyl-coa synthetase beta subunit protein | Agrobacterium radiobacter | 4.98/4.96 | 42028/46000 | 3.27 ± 0.12 | 0.001 | Cytoplasmic |
3 | gi|86359524 | acnA | Aconitate hydratase | Rhizobium etli | 5.48/5.69 | 97180/98000 | 1.65 ± 0.06 | 0.001 | Cytoplasmic |
4 | gi|116254139 | atpD | F0F1 ATP synthase subunit beta | Rhizobium leguminosarum | 5.03/4.88 | 50885/56000 | 2.68 ± 0.03 | 0.001 | Cytoplasmic |
E- Amino acid transport and metabolism | |||||||||
5 | gi|1245379 | glnA | Glutamine synthetase I | Sinorhizobium meliloti | 5.2/5.33 | 52287/61000 | 2.92 ± 0.08 | 0.001 | Cytoplasmic |
6 | gi|15887731 | argB | Acetylglutamate kinase | Agrobacterium tumefaciens | 5.16/5.41 | 31083/30000 | 2.19 ± 0.09 | 0.001 | Cytoplasmic |
7 | gi|89258357 |  | Putative periplasmic substrate binding protein | Ochrobactrum anthropi | 5.84/5.78 | 28188/24000 | ↑1.00 | - | Periplasmic |
8 | gi|222109054 | nocP | Opine permease ATP-binding protein | Agrobacterium radiobacter | 6.98/5.22 | 28288/20000 | ↑1.00 | - | Inner Membrane |
9 | gi|222087066 | pepF | Oligoendopeptidase F protein | Agrobacterium radiobacter | 5.32/5.33 | 68989/76000 | ↑1.00 | - | Cytoplasmic |
10 | gi|222087908 | asd | Aspartate-B-semialdehyde dehydrogenase protein | Agrobacterium radiobacter | 5.46/5.59 | 37925/45000 | 1.38 ± 0.043 | 0.001 | Cytoplasmic |
11 | gi|222084786 | argD | Diaminobutyrate--pyruvate aminotransferase protein | Agrobacterium radiobacter | 5.63/6.35 | 42909/43000 | ↑1.00 | - | Cytoplasmic |
12 | gi|114765810 | ilvE | Branched-chain amino acid aminotransferase | Pelagibaca bermudensis | 5.31/5.68 | 32142/35000 | ↑1.00 | - | Cytoplasmic |
F- Nucleotide transport and metabolism | |||||||||
13 | gi|86146888 | pyrH | Uridylate Kinase | Vibrio sp. | 5.08/5.82 | 26284/33000 | 1.38 ± 0.13 | 0.008 | Cytoplasmic |
G - Carbohydrate transport and metabolism | |||||||||
14 | gi|222085874 | eno | Phosphopyruvate hydratase | Agrobacterium radiobacter | 4.84/4.95 | 45120/53000 | 2.88 ± 0.37 | 0.005 | Cytoplasmic |
15 | gi|282887091 |  | Alpha amylase catalytic region | Burkholderia sp. | 6.26/5.03 | 64245/34000 | ↑1.00 | 0.001 | Cytoplasmic |
16 | gi|241206422 |  | Transaldolase | Rhizobium leguminosarum | 5.32/6.12 | 35091/29000 | ↑1.00 | - | Cytoplasmic |
17 | gi|11493200 | pgm | Phosphoglucomutase | Rhizobium tropici | 5.16/5.38 | 58641/72000 | ↑1.00 | - | Cytoplasmic |
18 | gi|222084905 | aglA | Alpha-glucosidase protein | Agrobacterium radiobacter | 4.84/4.86 | 62592/65000 | ↑1.00 | - | Cytoplasmic |
H - Coenzyme transport and metabolism | |||||||||
19 | gi|222086485 |  | ABC transporter | Agrobacterium radiobacter | 5.23/5.21 | 38975/42000 | 1.70 ± 0.09 | 0.001 | Periplasmic |
20 | gi|296105270 |  | Biotin protein ligase | Enterobacter cloacae | 5.23/5.42 | 35255/28000 | 3.98 ± 0.24 | 0.001 | Cytoplasmic |
I - Lipid transport and metabolism | |||||||||
21 | gi|299768808 |  | Acyl-coa dehydrogenase | Agrobacterium tumefaciens | 5.37/4.66 | 65994/40000 | ↑1.00 | - | Cytoplasmic |
22 | gi|282888281 |  | 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein | Burkholderia sp. | 6.27/5.74 | 38552/35000 | ↑1.00 | - | Cytoplasmic |
23 | gi|159186213 | pcaF | Beta-ketoadipyl coa thiolase | Agrobacterium tumefaciens | 5.51/6.37 | 41850/46000 | 2.95 ± 0.07 | 0.001 | Cytoplasmic |
P - Inorganic ion transport and metabolism | |||||||||
24 | gi|222087891 | bfr | Bacterioferritin | Agrobacterium radiobacter | 4.81/4.94 | 16860/19000 | 2.27 ± 0.07 | 0.001 | Cytoplasmic |
25 | gi|87199081 |  | Tonb-dependent receptor | Novosphingobium aromaticivorans | 5.82/5.01 | 87810/75000 | ↑1.00 | - | Extra Cellular |
Cellular processes and signaling | |||||||||
D - Cell cycle control, cell division, chromosome partitioning | |||||||||
26 | gi|222086436 | ftsZ2 | Cell division protein | Agrobacterium radiobacter | 5.21/5.39 | 63014/81000 | 2.42 ± 0.26 | 0.003 | Cytoplasmic |
27 | gi|50121473 | kicB | Condesin subunit F | Pectobacterium atrosepticum | 4.7/4.78 | 50717/57000 | ↑1.00 | - | Cytoplasmic |
T - Signal transduction mechanisms | |||||||||
28 | gi|117926246 |  | Protein tyrosine phosphatase | Magnetococcus sp | 6.29/5.28 | 18731/19000 | ↑1.00 | - | Cytoplasmic |
29 | gi|222087232 | prkA | Serine protein kinase protein | Agrobacterium radiobacter | 5.42/5.69 | 74417/84000 | 2.41 ± 0.19 | 0.001 | Cytoplasmic |
30 | gi|116252038 | ntrX | Putative two component response regulator Nitrogen assimilation regulatory protein | Rhizobium leguminosarum | 9.15/5.66 | 30427/34000 | ↑1.00 | - | Cytoplasmic |
31 | gi|159184131 | chvI | Two component response regulator | Agrobacterium tumefaciens | 5.56/5.85 | 27253/30000 | 1.35 ± 0.10 | 0.003 | Cytoplasmic |
O - Posttranslational modification, protein turnover, chaperones | |||||||||
32 | gi|222087564 | trxA | Thioredoxin | Agrobacterium radiobacter | 4.83/4.85 | 34469/39000 | ↑1.00 | - | Cytoplasmic |
33 | gi|118590060 | bcp | Bacterioferritin comigratory protein | Stappia aggregata | 5.63/5.37 | 16749/22000 | 3.40 ± 0.26 | 0.001 | Cytoplasmic |
34 | gi|58826564 | dnaK | Dnak | Rhizobium tropici | 4.91/5.37 | 68393/74000 | ↑1.00 | - | Cytoplasmic |
35 | gi|222085003 | groEL | Chaperonin GroEL | Agrobacterium radiobacter | 5.03/5.11 | 57836/69000 | 1.36 ± 0.19 | 0.012 | Cytoplasmic |
M - Cell wall/membrane/envelope biogenesis | |||||||||
36 | gi|86359655 |  | Putative metalloendopeptidase protein | Rhizobium etli | 5.36/4.89 | 49514/29000 | 1.31 ± 0.22 | 0.02 | Periplasmic |
37 | gi|222085864 | omp1 | Outer membrane lipoprotein | Agrobacterium radiobacter | 5.26/5.66 | 84589/90000 | ↑1.00 | - | Extra Cellular |
N - Cell motility | |||||||||
38 | gi|18033179 | virD4 | VirD4 | Agrobacterium tumefaciens | 6.82/5.24 | 73380/69000 | 1.21 ± 0.16 | 0.024 | Cytoplasmic |
Information storage and processing | |||||||||
J - Translation, ribosomal structure and biogenesis | |||||||||
39 | gi|222085858 | tsf | Translation elongation factor Ts | Agrobacterium radiobacter | 5.15/5.14 | 32268/40000 | 1.86 ± 0.02 | 0.001 | Cytoplasmic |
40 | gi|227821753 | fusA | Elongation factor G | Rhizobium sp. | 5.17/5.3 | 77966/89000 | 1.98 ± 0.13 | 0.001 | Cytoplasmic |
41 | gi|86355771 | pnp | Polynucleotide phosphorylase/polyadenylase | Rhizobium etli | 5.2/5.19 | 77491/89000 | 2.23 ± 0.09 | 0.001 | Cytoplasmic |
42 | gi|294624706 | infB | Translation initiation factor IF-2 | Xanthomonas fuscans | 5.89/5.79 | 83626/75000 | 1.29 ± 0.09 | 0.003 | Cytoplasmic |
43 | gi|218672404 | tufB1 | Elongation factor EF-Tu protein | Rhizobium etli | 4.87/5.31 | 31884/48000 | 3.40 ± 0.31 | 0.0024 | Cytoplasmic |
K – Transcription | |||||||||
44 | gi|89056301 |  | LysR family transcriptional regulator | Jannaschia sp. | 5.574.48 | 32077/28000 | ↑1.00 | - | Cytoplasmic |
45 | gi|159184760 |  | AraC family transcriptional regulator | Agrobacterium tumefaciens | 7.11/5.74 | 27498/25000 | ↑1.00 | - | Cytoplasmic |
46 | gi|222081230 |  | Transcriptional regulator protein | Agrobacterium radiobacter | 6.38/5.6 | 98220/98000 | 4.71 ± 0.09 | 0.001 | Cytoplasmic |
47 | gi|190895600 |  | Probable transcriptional | Rhizobium etli | 6.91/5.42 | 42937/85000 | ↑1.00 | - | Cytoplasmic |
48 | gi|222106418 |  | Transcriptional regulator GntR family | Agrobacterium vitis | 5.82/5.78 | 26366/49000 | ↑1.00 | - | Cytoplasmic |
49 | gi|222106466 |  | Transcriptional regulator ROK family | Agrobacterium vitis | 7.03/5.14 | 41156/42000 | ↑1.00 | - | Cytoplasmic |
50 | gi|222082875 |  | Transcriptional regulator, MarR family | Agrobacterium radiobacter | 5.46/5.57 | 18141/20000 | ↑1.00 | - | Cytoplasmic |
L - Replication, recombination and repair | |||||||||
51 | gi|222084927 |  | ATP-dependent RNA helicase protein | Agrobacterium radiobacter | 9.17/5.36 | 69955/67000 | 2.29 ± 0.14 | 0.001 | Cytoplasmic |
Poorly characterized | |||||||||
R - General function prediction only | |||||||||
52 | gi|222086102 | sufC | FeS assembly ATPase SufC | Agrobacterium radiobacter | 5.08/4.95 | 27375/32000 | ↑1.00 | - | Inner Membrane |
53 | gi|222082138 | cpo | Chloride peroxidase protein | Agrobacterium radiobacter | 7.88/6.37 | 34965/32000 | 1.59 ± 0.02 | 0.001 | Periplasmic |
54 | gi|186472508 | wrbA | Flavoprotein WrbA | Burkholderia phymatum | 6.19/5.91 | 20930/26000 | 2.58 ± 0.14 | 0.001 | Cytoplasmic |
55 | gi|170699364 |  | NADPH-dependent FMN reductase | Burkholderia ambifaria | 6.71/6.31 | 8539/17000 | 2.03 ± 0.19 | 0.002 | Periplasmic |
56 | gi|194431754 | dkgA | 2,5-diketo-D-gluconic acid reductase A | Shigella dysenteriae | 6.22/5.15 | 19399/23000 | 1.34 ± 0.21 | 0.002 | Cytoplasmic |
57 | gi|222085370 |  | Ferredoxin reductase protein | Agrobacterium radiobacter | 5.88/5.65 | 43777/53000 | 1.48 ± 0.12 | 0.003 | Cytoplasmic |
S - Function Unknown | |||||||||
58 | gi|222149801 |  | Hypothetical protein Avi_3814 | Agrobacterium vitis | 5.03/5.01 | 24632/29000 | 1.42 ± 0.34 | 0.033 | Periplasmic |
NO related COG | |||||||||
59 | gi|209547526 |  | Hypothetical protein Rleg2_5527 | Rhizobium leguminosarum | 6.02/5.89 | 33584/44000 | 1.57 ± 0.13 | 0.002 | Cytoplasmic |