Table 1 Details of Vibrio cholerae strains used and their MLVA profiles*
From: Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae
Strain | Year | Country of Isolation | Source% | Original laboratory identification | VNTR allele | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
vc0147 | vc0437 | vc1457 | vc1650 | vca0171 | vca0283 | ||||||
Pre-7th$ | M66-2 | 1937 | Indonesia (Sulawesi) | Institut Pasteur | 8 | 6 | 4 | 7 | 14 | 28 | |
M543 | 1937 | Iraq | NCTC | 5395 | 6 | 17 | 4 | 7 | 17 | 31 | |
M640 | 1954 | Egypt | NCTC | 9420 | 8 | 14 | 4 | 5 | 11 | 24 | |
I | M686 | 1968 | Thailand | AFRIMS | SP-EV-29-1 | 8 | 6 | 4 | 7 | 15 | 21 |
M799 | 1989 | Hong Kong | University of Hong Kong | In21 | 9 | 6 | 3 | 8 | 16 | 15 | |
M803 | 1961 | Hong Kong | Institut Pasteur | HK1 | 8 | 6 | 4 | 7 | 11 | 28 | |
M804 | 1962 | India | Institut Pasteur | 930030 | 8 | 5 | 4 | 7 | 15 | 35 | |
M805 | 1963 | Cambodia | Institut Pasteur | 930059 | 8 | 6 | 4 | 8 | 14 | 24 | |
M806 | 1964 | India | Institut Pasteur | CRC1106 | 8 | 6 | 4 | 8 | 14 | 35 | |
M807 | 1966 | Vietnam | Institut Pasteur | 601 | 8 | 6 | 4 | 7 | 15 | 19 | |
M808 | 1969 | Vietnam | Institut Pasteur | 1536 | 9 | 6 | 4 | 7 | 16 | 17 | |
M811 | 1971 | Burma | Institut Pasteur | 930029 | 7 | 6 | 4 | 7 | 7 | 33 | |
M815 | 1973 | Philippines | Institut Pasteur | 430035 | 7 | 6 | 4 | 8 | 16 | 21 | |
M820 | 1978 | Malaysia | Institut Pasteur | EB 251/1MR | 7 | 6 | 4 | 7 | 8 | 19 | |
M662 | 1993 | Indonesia (Bali) | State Health Laboratory, Perth | 7340 | 8 | 7 | 3 | 8 | 12 | 16 | |
M663 | 1992 | Indonesia (Bali) | IMVS | 2100 | 7 | 7 | 3 | 8 | 13 | 27 | |
M793 | 1961 | Indonesia | University of Maryland | E9120 | 8 | 6 | 4 | 7 | 11 | 32 | |
Consensus | 8 | 6 | 4 | 7 | x | x | |||||
II | M812, M817 | 1971/ 1974 | Chad | Institut Pasteur | 930046/ 99 | 9 | 6 | 4 | 7 | 13 | 25 |
M810 | 1970 | Ethiopia | Institut Pasteur | 930038 | 8 | 6 | 4 | 8 | 19 | 23 | |
M814 | 1972 | Morrocco | Institut Pasteur | 113 | 9 | 6 | 4 | 7 | 14 | 27 | |
M816 | 1974 | Senegal | Institut Pasteur | B998C | 9 | 6 | 4 | 7 | 14 | 24 | |
M813, M819 | 1972/ 1975 | Senegal/ Germany | Institut Pasteur | 9292/ 232 | 9 | 6 | 4 | 7 | 14 | 26 | |
M809 | 1970 | Sierra Leone | Institut Pasteur | 930037 | 9 | 6 | 4 | 7 | 14 | 25 | |
M818 | 1975 | Comoros Islands | Institut Pasteur | 102 | 9 | 6 | 4 | 7 | 15 | 29 | |
M821 | 1982 | France | Institut Pasteur | Assous M | 12 | 6 | 4 | 7 | 17 | 10 | |
M823 | 1984 | Algeria | Institut Pasteur | Marquez | 10 | 6 | 4 | 7 | 16 | 17 | |
M826 | 1990 | Malawi | Institut Pasteur | Bakala Malenge | 10 | 6 | 3 | 8 | 21 | 21 | |
M2314 | 1991 | Peru | Instituto Oswaldo, Brasil | 348 | 10 | 6 | 4 | 6 | 15 | 11 | |
M2315 | 1999 | Brazil | Instituto Oswaldo, Brasil | 590 | 8 | 6 | 4 | 6 | 17 | 19 | |
M2316 | 1998 | Peru | Instituto Oswaldo, Brasil | 609 | 8 | 3 | 4 | 5 | 26 | 12 | |
M829 | 1992 | Malawi | Institut Pasteur | F. Francisco | 7 | 6 | 3 | 8 | 18 | 10 | |
M830 | 1993 | French Guiana | Institut Pasteur | Modesto | 10 | 6 | 4 | 6 | 19 | 13 | |
Consensus | 9 | 6 | 4 | 7 | x | x | |||||
III | RC9† | 1985 | Kenya | 9 | 6 | 3 | 7 | 26 | 20 | ||
M650 | 1976 | India | National Institute of Cholera | 762/76 | 8 | 7 | 4 | 8 | 29 | 28 | |
M647 | 1970 | Bangladesh | CCUG | 13119 | 9 | 7 | 4 | 7 | 14 | 28 | |
M795 | 1976 | Bangladesh | University of Maryland | 30167 | 9 | 7 | 4 | 7 | 18 | 32 | |
M797 | 1986 | Hong Kong | University of Hong Kong | V31 | 9 | 7 | 4 | 7 | 22 | 36 | |
N16961† | 1971 | Bangladesh | 9 | 7 | 4 | 7 | 23 | 14 | |||
Consensus | 9 | 7 | 4 | 7 | x | x | |||||
IV | M646 | 1979 | Bangladesh | CCUG | 9193 | 9 | 7 | 4 | 7 | 20 | 21 |
M822 | 1983 | Vietnam | Institut Pasteur | 359 | 10 | 7 | 7 | 8 | 17 | 19 | |
M764 | 1989 | Thailand | AFRIMS | FX-41-3 | 7 | 7 | 4 | 5 | 15 | 24 | |
M740 | 1985 | Thailand | AFRIMS | D-145 | 9 | 7 | 4 | 5 | 15 | 25 | |
M723 | 1982 | Thailand | AFRIMS | WR-32 | 9 | 7 | 4 | 5 | 20 | 22 | |
M714 | 1979 | Thailand | AFRIMS | 96A/CO | 11 | 8 | 4 | 8 | 20 | 19 | |
M652 | 1981 | India | National Institute of Cholera | 1200/81 | 9 | 7 | 4 | 8 | 20 | 13 | |
Consensus | 9 | 7 | 4 | x | 20 | x | |||||
V | M824 | 1987 | Algeria | Institut Pasteur | Mekki | 8 | 7 | 4 | 8 | 28 | 14 |
M827 | 1990 | Guinea | Institut Pasteur | Guinea1 | 8 | 7 | 4 | 8 | 24 | 16 | |
M828 | 1991 | Morrocco | Institut Pasteur | Akretche | 8 | 7 | 4 | 8 | 23 | 17 | |
M791 | 1991 | Thailand | AFRIMS | CX-043-0 | 8 | 7 | 4 | 8 | 12 | 20 | |
MJ1236† | 1994 | Bangladesh | 8 | 7 | 4 | 8 | 12 | 19 | |||
CIRS-101† | 2002 | Bangladesh | 9 | 3 | 3 | 9 | 16 | 11 | |||
B33† | 2004 | Mozambique | 8 | 7 | 4 | 8 | 11 | 20 | |||
M654 | 1991 | India | National Institute of Cholera | 413/91 | 7 | 7 | 4 | 8 | 15 | 20 | |
Consensus | 8 | 7 | 4 | 8 | x | x | |||||
VI | M834 | 1993 | Bangladesh | ICDDR | A25365 | 10 | 7 | 3 | 8 | 22 | 11 |
M833 | 1993 | Bangladesh | ICDDR | A24698 | 9 | 7 | 3 | 9 | 23 | 11 | |
M985, M984, M988, M831 | 1992/ 1993 | India/ Bangladesh | ICDDR | F642/F641/ F657/ A26094 | 10 | 7 | 3 | 9 | 23 | 11 | |
M987 | 1992 | India | ICDDR | F638 | 10 | 7 | 3 | 9 | 23 | 12 | |
M989 | 1993 | India | ICDDR | 2412-93 | 10 | 7 | 3 | 9 | 22 | 13 | |
M986 | 1992 | India | ICDDR | F643 | 12 | 7 | 3 | 9 | 23 | 11 | |
M835 | 1993 | Bangladesh | ICDDR | A25080 | 10 | 7 | 3 | 9 | 24 | 12 | |
M537, M542# | 1993 | India/ Bangladesh | ICDDR | SK556/ F653 | 10 | 7 | 3(4) | 9 | 23 | 13 | |
M545 | 1993 | India | ICDDR | MO229 | 10 | 7 | 3 | 9 | 21 | 13 | |
MO10† | 1992 | India | 10 | 7 | 3 | 9 | 22 | 12 | |||
Consensus# | 10 | 7 | 3 | 9 | 23 | x | |||||