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Table 4 Comparative sequence analysis of single cysts from Sweh207 at the tpi locus

From: Allelic sequence heterozygosity in single Giardia parasites

Sub-assemblageIsolate

Material

GenBank acc no

Nucleotide position from start of gene

   

39*

91*

162

165*

168*

189

210*

258

423

BIII/ 2924

 

AY228628

G

C

G

C

C

A

G

C

G

BIV/Ad-19

 

AF069560

A

T

G

T

T

A

A

C

G

Sweh207

Crude stool isolate

JN579665

A

C

R

Y

Y

R

R

C

G

Sweh207_161

Single cyst

JN579666

A

C

R

Y

Y

R

R

C

G

Sweh207_227

  

A

C

R

Y

Y

R

R

C

G

Sweh207_222

  

A

C

R

Y

Y

R

R

C

G

Sweh207_166

Single cyst

JN579667

A

Y

R

Y

Y

A

R

C

R

Sweh207_228

  

A

C

R

Y

Y

R

R

C

G

Sweh207_220

Single cyst

JN579669

R

Y

R

Y

Y

A

R

C

R

Sweh207_224

Single cyst

JN579670

R

Y

R

Y

Y

A

R

Y

R

Sweh207_171

Single cyst

JN579668

A

C

A

C

C

A

G

C

G

  1. *These nucleotide positions are substitution patterns proposed as markers for different B sub-assemblages [25].