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Table 2 Comparative sequence analysis of single cysts from Sweh197 at the tpi locus

From: Allelic sequence heterozygosity in single Giardia parasites

Sub-assemblageIsolate

Material

GenBank acc no

Nucleotide position fromstart of gene

   

39*

114

165*

280

BIII/2924

 

AY228628

G

C

C

A

BIV/Ad-19

 

AF069560

A

C

T

A

Sweh197

Crude stool isolate

JN579672

R

Y

Y

R

Sweh197_200

Single cyst

JN579676

R

Y

Y

R

Sweh197_84

Single cyst

JN579673

R

C

Y

R

Sweh197_201

  

R

C

Y

R

Sweh197_86

Single cyst

JN579674

R

Y

C

R

Sweh197_98

  

R

Y

C

R

Sweh197_149

  

R

Y

C

R

Sweh197_213

  

R

Y

C

R

Sweh197_196

Single cyst

JN579675

A

C

C

G

Sweh197_197

  

A

C

C

G

Sweh197_212

  

A

C

C

G

Sweh197_208

  

A

C

C

G

Sweh197_207

Single cyst

EU272158

G

T

C

A

Sweh197_215

Single cyst

GU56428

G

C

T

A

  1. * These nucleotide positions are substitution patterns proposed as markers for different B sub-assemblages [25].