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Table 1 Typing data and origin of Aeromonas strains analyzed in the study

From: Multilocus genetics to reconstruct aeromonad evolution

MLPA clade or isolated taxon Strain ST CC (5)a CC (4)b Allelic profile Origin Infection (I) or colonization (C) Region, country and year of isolation
      dnaK gltA gyrB radA rpoB tsf zipA    
A. hydrophila
(n=35)
BVH3 2 - A 2 2 2 2 2 2 2 Human, Wound I Cahors, Fr, 2006
  BVH14 7 - A 7 2 7 7 2 2 2 Human, Wound I Le Mans, Fr, 2006
  A. hydrophila subsp. hydrophila CCM 2278 7 - A 7 2 7 7 2 2 2 Non-human,
Red-legged Frog
I California, USA, 1963
  BVH29 18 - - 18 15 17 17 13 15 17 Human, Wound I Reunion Island, Fr, 2006
  BVH30 18 - - 18 15 17 17 13 15 17 Human, Stool I Langres, Fr, 2006
  BVH35 23 - - 23 19 21 22 18 12 20 Human, Wound C La Roche sur Yon, Fr, 2006
  BVH99 23 - - 23 19 21 22 18 12 20 Human, NA ND Brest, Fr, ND
  BVH25a 15 - - 15 13 14 14 10 13 14 Human, Respiratory tract I Saint-Brieux, Fr,2006
  BVH27b 15 - - 15 13 14 14 10 13 14 Human, Wound I Reunion Island, Fr, 2006
  AK204 15 - - 15 13 14 14 10 13 14 Non-human, Snail I Angers, Fr, 1995
  BVH2 1 - - 1 1 1 1 1 1 1 Human, Wound I Cahors, Fr, 2006
  BVH12 5 - - 5 5 5 5 5 5 5 Human, Eyes infection I Cherbourg, Fr, 2006
  BVH24 14 - - 14 12 13 13 9 12 13 Human, Wound I Saint-Brieux, Fr,2006
  BVH33 21 - - 21 18 20 20 16 2 20 Human, Wound I La Rochelle, Fr, 2006
  BVH34 22 - - 22 15 17 21 17 18 21 Human, Urine C La Roche sur Yon, Fr, 2006
  BVH36 24 - - 24 20 22 23 19 5 22 Human, Wound I La Roche sur Yon, Fr, 2006
  BVH41 28 - - 28 24 26 27 23 22 26 Human, Wound I Vannes, Fr, 2006
  BVH42 29 - - 29 25 27 28 24 12 27 Human, Wound I Périgueux, Fr, 2006
  BVH45 32 - - 32 28 30 14 10 25 30 Human, Wound I Périgueux, Fr, 2006
  BVH64 48 - - 47 15 44 42 35 35 42 Human, Wound I Belfort, Fr, 2006
  BVH72 55 - - 52 42 49 48 39 12 46 Human, Blood ND Martinique Island, Fr, ND
  BVH75 57 - - 53 44 51 49 2 12 48 Human, Respiratory tract I Saint-Etienne, Fr,2006
  BVH93 68 - - 63 52 60 57 47 45 14 Human, Wound I Cahors, Fr, 2006
  BVH96 70 - - 65 54 62 59 48 47 56 Human, Wound C Bourg en Bresse, Fr, 2006
  BVH97 71 - - 66 55 63 1 49 48 57 Human, Wound I Bourg en Bresse, Fr, 2006
  ADV105 76 - - 69 58 67 63 51 49 60 Human, Stool ND Montpellier, Fr, 2008
  AK203 93 - - 86 70 81 76 60 61 14 Non-human, Snail I Angers, Fr, 1995
  AK218 95 - - 88 72 83 78 47 49 74 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK235 105 - - 97 79 93 88 66 67 81 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  A. hydrophila subsp. hydrophila CECT 839T 130 - - 120 102 114 108 79 81 22 Environment, Tin of milk with a fishy odor - NA, NA, NA
  A. hydrophila subsp. ranae CIP 107985 131 - - 121 103 115 109 80 82 101 Non-human, Frog I NA, Thaïland, NA
  A. hydrophila CECT 5734 163 - - 150 132 144 137 104 12 127 Non-human, Fish I Valencia, Spain, 1987
  A. hydrophila subsp. hydrophila CCM 2280 171 - - 69 139 152 145 111 115 134 Non-human, Snake - NA, NA, 1963
  A. hydrophila subsp. hydrophila CCM 2282 172 - - 158 140 153 146 47 116 135 Non-human, Nile Monitor ND NA, NA, 1963
  A. hydrophila subsp. hydrophila CCM 4528 174 - - 160 15 17 148 13 118 137 Human, Stool ND NA, Czech Republic, 1993
A. veronii
(n=71)
BVH22 13 - - 13 11 12 4 8 11 12 Human, Wound I Alès, Fr, 2006
  BVH23 13 - - 13 11 12 4 8 11 12 Human, Wound I Saint-Brieux, Fr,2006
  BVH25b 13 - - 13 11 12 4 8 11 12 Human, Respiratory tract I Saint-Brieux, Fr,2006
  BVH26a 13 - - 13 11 12 4 8 11 12 Human, Wound I Saint-Brieux, Fr,2006
  BVH27a 13 - - 13 11 12 4 8 11 12 Human, Wound I Reunion Island, Fr,2006
  BVH28a 13 - - 13 11 12 4 8 11 12 Human, Wound I Reunion Island, Fr,2006
  BVH61 46 5 D 46 29 31 31 34 34 40 Human, Stool I Antibes, Fr,2006
  BVH71 54 5 D 46 29 31 31 26 34 40 Human, Stool ND Martinique Island, Fr, ND
  BVH47 33 - D 33 29 31 31 26 16 31 Human, Blood I Roubaix, Fr,2006
  ADV102 33 - D 33 29 31 31 26 16 31 Human, Stool ND Montpellier, Fr, 2008
  BVH18 10 - - 10 9 10 10 7 9 9 Human, Wound I Villeneuve sur Lot, Fr, 2006
  AK249 10 - - 10 9 10 10 7 9 9 Environment,
Water lake
  Annecy, Fr, 1998
  ADV129 85 8 H 78 64 74 69 56 56 67 Human, Stool ND Montpellier, Fr, 2009
  ADV133 89 8 H 82 64 74 69 56 56 67 Human, Wound I Montpellier, Fr, 2010
  BVH 90 66 7 G 61 6 58 55 45 43 53 Human, Stool I Dunkerque, Fr, 2006
  AK236 106 7 G 61 6 58 55 45 68 53 Environment, Water lake - Annecy, Fr, 1998
  BVH37 25 - - 25 21 23 24 20 19 23 Human, Blood I La Roche sur Yon, Fr, 2006
  BVH46 25 - - 25 21 23 24 20 19 23 Human, Blood I Roubaix, Fr, 2006
  BVH56 42 4 E 42 36 40 24 32 6 23 Human, Blood I Versailles, Fr, 2006
  ADV101 74 4 E 42 57 40 24 32 19 23 Human, Stool ND Montpellier, Fr, 2008
  A. veronii bv. veronii CECT 4257T 143 - - 131 114 125 120 11 19 110 Human, Respiratory tract I Michigan, USA, NA
  A. veronii CCM 4360 143 - - 131 114 125 120 11 19 110 Human, Stool I Connecticut, USA, 1984
  BVH6 4 - - 4 4 4 4 4 4 4 Human, Wound I Cahors, Fr, 2006
  BVH13 6 - - 6 6 6 6 4 6 6 Human, Blood I Le Mans, Fr, 2006
  BVH26b 16 - - 16 11 15 15 11 6 15 Human, Wound I Saint-Brieux, Fr,2006
  BVH31 19 - - 19 16 18 18 14 16 18 Human, Bile I La Rochelle, Fr, 2006
  BVH32 20 - - 20 17 19 19 15 17 19 Human, Stool C La Rochelle, Fr, 2006
  BVH44 31 - - 31 27 29 30 20 24 29 Human, Wound I Périgueux, Fr, 2006
  BVH49 35 - - 35 30 33 33 20 27 33 Human, Stool I Chalon sur Saone, Fr, 2006
  BVH50 36 - - 36 31 34 34 28 6 34 Human, Respiratory tract I Chalon sur Saone, Fr, 2006
  BVH53 39 - - 39 34 37 37 31 30 29 Human, Blood I Saint Denis, Fr, 2006
  BVH54 40 - - 40 35 38 38 4 31 37 Human, Respiratory tract I Saint Denis, Fr, 2006
  BVH59 44 - - 44 37 41 39 33 19 38 Human, Blood I Le Havre, Fr, 2006
  BVH60 45 - - 45 38 42 40 20 33 39 Human, Stool I Antibes, Fr, 2006
  BVH73 56 - - 39 43 50 37 40 38 47 Human, Blood ND Martinique Island, Fr, NA
  BVH77 58 - - 54 45 52 50 41 19 49 Human, Stool C Aix en Provence, Fr, 2006
  BVH79 59 - - 55 46 53 51 4 19 37 Human, Wound I Aix en Provence, Fr, 2006
  BVH80 60 - - 56 47 54 52 42 39 50 Human, Stool I Aix en Provence, Fr, 2006
  BVH95 69 - - 64 53 61 58 20 46 55 Human, Wound I Bourg en Bresse, Fr, 2006
  ADV103 75 - - 68 29 66 62 26 34 59 Human, Stool ND Montpellier, Fr, 2008
  ADV109 78 - - 71 60 69 65 53 51 61 Human, Stool ND Montpellier, Fr, 2008
  ADV119 80 - - 73 61 70 66 53 52 62 Human, Stool ND Montpellier, Fr, 2009
  ADV125 83 - - 76 63 72 68 54 54 65 Human, Stool ND Montpellier, Fr, 2009
  ADV127 84 - - 77 11 73 68 55 55 66 Human, Stool ND Montpellier, Fr, 2009
  ADV130 86 - - 79 11 75 70 33 17 68 Human, Blood ND Montpellier, Fr, 2010
  ADV131 87 - - 80 65 76 71 11 19 69 Human, Respiratory tract ND Montpellier, Fr, 2009
  ADV135 90 - - 83 67 78 73 57 58 23 Human, Stool ND Montpellier, Fr, 2010
  ADV137b 91 - - 84 68 79 74 58 59 71 Human, Respiratory tract ND Montpellier, Fr, 2010
  AK219 96 - - 89 27 84 79 11 62 75 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK222 97 - - 90 73 85 80 62 19 76 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK226 99 - - 92 75 87 82 8 63 12 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK227 100 - - 93 76 88 83 34 64 29 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK232 103 - - 95 11 91 86 64 65 79 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK237 107 - - 98 80 94 51 67 19 82 Environment, Water lake - Annecy, Fr, 1998
  AK238 108 - - 99 81 95 89 34 69 83 Environment, Water lake - Annecy, Fr, 1998
  AK239 109 - - 100 82 73 68 55 6 84 Environment, Water lake - Annecy, Fr, 1998
  AK240 110 - - 101 83 96 90 20 19 85 Environment, Water lake - Annecy, Fr, 1998
  AK241 111 - - 102 84 97 91 20 56 86 Non-human, Snail I Angers, Fr, 1995
  AK242 112 - - 25 85 98 92 68 19 23 Environment, Water lake - Annecy, Fr, 1998
  AK243 113 - - 103 86 98 93 20 70 87 Non-human, Snail I Angers, Fr, 1995
  AK244 114 - - 104 87 99 94 69 19 23 Environment, Water lake - Annecy, Fr, 1998
  AK246 116 - - 106 89 101 95 71 19 12 Non-human, Snail I Angers, Fr, 1995
  AK247 117 - - 107 90 102 96 58 72 89 Environment, Water lake - Annecy, Fr, 1998
  AK248 118 - - 108 91 103 97 34 73 90 Environment, Water lake - Annecy, Fr, 1998
  AK250 119 - - 109 27 83 98 11 19 75 Environment, Water lake - Annecy, Fr, 1998
  AK251 120 - - 110 92 104 99 20 19 91 Environment, Water lake - Annecy, Fr, 1998
  A. culicicola CIP 107763 T 124 - - 114 96 108 4 33 77 95 Non-human, Mosquito midgut ND Pune, India, 1997
  A. ichthiosmia CECT 4486T 132 - - 122 104 116 110 81 19 102 Environment, Surface water - NA, Germany, 1986
  A. veronii bv. sobria LMG 13067 144 - - 132 115 126 121 8 93 12 Non-human, Frog I Connecticut, USA, NA
  A. veronii CECT 4902 161 - - 148 131 143 136 103 108 126 Environment, NA - NA, Germany, 1993
  A. veronii CECT 7059 164 - - 151 133 145 138 33 109 39 Environment, Drinking water - Zaragoza, Spain, 2002
A. caviae
(n=34)
BVH16 9 1 B 9 8 9 9 3 8 8 Human, Respiratory tract C Rambouillet, Fr, 2006
  BVH57 43 1 B 43 8 9 9 3 32 8 Human, Blood I Versailles, Fr, 2006
  BVH63 47 6 F 12 10 43 41 3 10 41 Human, Blood I Macon, Fr, 2006
  BVH84 47 6 F 12 10 43 41 3 10 41 Human, Stool I Aix en Provence, Fr, 2006
  BVH98 72 - F 12 10 64 60 37 10 41 Human, Wound I Brest, Fr, NA
  ADV118 79 6 F 72 10 43 8 3 10 41 Human, Wound I Montpellier, Fr, 2009
  ADV121 81 - F 74 10 43 8 3 3 63 Human, Stool ND Montpellier, Fr, 2009
  BVH48 34 2 C 34 10 32 32 27 26 32 Human, Vagina C Monceau les mines, Fr, 2006
  A. caviae CCUG 48892 175 2 C 34 10 32 32 27 3 32 Environment,
Water
  Uppsala, Sweden, 2004
  BVH19 11 - C 11 10 3 11 3 10 10 Human, Vagina C Villeneuve sur Lot, Fr, 2006
  BVH81 61 - C 34 10 3 11 3 26 32 Human, Stool C Aix en Provence, Fr, 2006
  BVH66 50 - C 34 10 46 44 37 26 32 Human, Wound I Martinique Island, Fr, 2006
  BVH55 41 3 C 41 10 39 12 3 26 32 Human, Stool I Saint-Denis, Fr, 2006
  BVH87 64 3 C 59 10 39 12 3 26 32 Human, Stool I Aix en Provence, Fr, 2006
  BVH4 3 - - 3 3 3 3 3 3 3 Human, Wound I Cahors, Fr, 2006
  BVH15 8 - - 8 7 8 8 6 7 7 Human, Blood I Grasse, Fr, 2006
  BVH20 12 - - 12 10 11 12 3 8 11 Human, Stool I Gonesse, Fr, 2006
  BVH51 37 - - 37 32 35 35 29 28 35 Human, Blood I Monaco, Fr, 2006
  BVH52 38 - - 38 33 36 36 30 29 36 Human, Blood I Monaco, Fr, 2006
  BVH67 51 - - 49 32 47 45 3 8 35 Human, Stool ND Martinique Island, Fr, NA
  BVH85 62 - - 57 48 55 11 3 40 8 Human, Stool I Aix en Provence, Fr, 2006
  BVH86 63 - - 58 49 56 53 43 41 51 Human, Stool C Aix en Provence, Fr, 2006
  BVH100 73 - - 67 56 65 61 50 26 58 Human, Wound ND Brest, Fr, ND
  ADV106 77 - - 70 59 68 64 52 50 35 Human, Stool ND Montpellier, Fr, 2008
  ADV124 82 - - 75 62 71 67 3 53 64 Human, Stool ND Montpellier, Fr, 2009
  AK223 98 - - 91 74 86 81 3 8 77 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK229 101 - - 34 77 89 84 37 3 78 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK231 102 - - 94 78 90 85 63 26 32 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK234 104 - - 96 10 92 87 65 66 80 Environment, Waste water treatment lagoon - Montracol, Fr, 2006
  AK245 115 - - 105 88 100 11 70 71 88 Environment, Water lake - Annecy, Fr, 1998
  A. caviae CECT 838 T 123 - - 113 95 107 102 74 76 94 Non-human, Guinea pig I NA, USA, NA
  A. hydrophila subsp. anaerogenes CECT 4221 128 - - 118 100 112 106 50 3 99 Environment, Used oil emulsion - NA, USA, NA
  A. caviae CECT 4222 154 - - 142 78 136 131 37 103 35 Environment, Sewage - NA, NA, 1954
  A. caviae CECT 4226 155 - - 118 125 137 11 50 3 120 Environment, Used oil emulsion - NA, USA, 1953
A. piscicola
(n=3)
A. piscicola LMG 24783T 151    139 122 133 128 95 100 117 Non-human, Salmon I Gallicia, Spain, 2005
  A. sobria CECT 4333 156 9 J 143 126 138 132 98 104 121 Non-human, Diseased elver I Valencia, Spain, NA
  Aeromonas sp. CECT 5177 162 9 J 149 126 138 132 98 104 121 Environment, Drinking water - Eeklo, Belgium, 1996
A. salmonicida
(n=8)
A. salmonicida subsp. achromogenes CIP 104001 136 - I 126 107 120 114 85 86 94 Non human, Trout ND Aberdeen, UK, 1963
  A. salmonicida subsp. masoucida CIP 103210 137 - I 126 108 120 115 85 87 105 Non human, Fish blood I NA, NA, 1969
  A. salmonicida subsp. smithia CIP 104757 137 - I 126 108 120 115 85 87 105 Non human, Fish ulcer I NA, UK, NA
  A. salmonicida subsp. salmonicida CIP 103209T 139 - I 126 110 120 114 85 89 105 Non human, Diseased salmon I Cletter river, UK, 1953
  BVH39 26 - - 26 22 24 25 21 20 24 Human, Wound C Vannes, Fr, 2006
  A. salmonicida subsp. pectinolytica CIP 107036 138 - - 127 109 121 116 86 88 106 Environment,
River water
  Buenos Aires, Argentina, NA
  A. salmonicida CCM 1150 168 - - 155 136 149 142 108 112 131 Non human,
Fish
ND NA, Czech Republic, 1961
  A. salmonicida CCM 1275 170 - - 157 138 151 144 110 114 133 Fish ND NA, Czech Republic, 1961
A. allosaccharophila
(n=3)
BVH88 65 - - 60 50 57 54 44 42 52 Human, Blood I Dunkerque, Fr, 2006
  A. allosaccharophila CECT 4199T 121 - - 111 93 105 100 72 74 92 Non-human, Fish I Valencia, Spain, 1991
  A. sobria CECT 4053 153 - - 141 124 135 130 97 102 119 Environment,
Activated sludge
  Stockholm, Sweden, 1978
A. sobria
(n=5)
A. sobria CECT 4245T 141 - - 129 112 123 118 88 91 108 Non-human, Fish ND NA, Fr, 1974
  Aeromonas sp. CECT 4816 157 - - 144 127 139 133 99 105 122 Non-human, Fish ND NA, NA, 1993
  Aeromonas sp. CECT 4817 158 - - 145 128 140 134 100 106 123 Non-human, Fish ND NA, NA, 1993
  Aeromonas sp. CECT 4818 159 - - 146 129 141 135 101 107 124 Non-human, Fish ND NA, NA, 1993
  A. sobria CECT 4821 160 - - 147 130 142 118 102 91 125 Non-human, Fish ND NA, NA, 1993
A. aquariorum
(n=8)
BVH28b 17 - - 17 14 16 16 12 14 16 Human, Wound I Reunion Island, Fr, 2006
  BVH43 30 - - 30 26 28 29 25 23 28 Human, Wound I Périgueux, Fr, 2006
  BVH65 49 - - 48 39 45 43 36 36 43 Human, Blood I Martinique Island, Fr, 2006
  BVH68 52 - - 50 40 48 46 12 23 44 Human, NA ND Martinique Island, Fr, ND
  BVH70 53 - - 51 41 28 47 38 37 45 Human, NA ND Martinique Island, Fr, ND
  ADV132 88 - - 81 66 77 72 25 57 70 Human, Wound I Montpellier, Fr, 2010
  A. hydrophila subsp. dhakensis CIP 107500 129 - - 119 101 113 107 78 23 100 Human, Stool I NA, Bangladesh, NA
  A. aquariorum CECT 7289T 145 - - 133 116 127 122 89 94 111 Non-human, Fish ND NA, Portugal, 2003
A. media
(n=6)
BVH40 27 - - 27 23 25 26 22 21 25 Human, Stool C Vannes, Fr, 2006
  AK202 92 - - 85 69 80 75 59 60 72 Non-human, Snail I Angers, Fr, 1995
  AK211 94 - - 87 71 82 77 61 60 73 Non-human, Snail I Angers, Fr, 1995
  A. media CECT 4232 T 134 - - 124 71 118 112 83 84 97 Environment, Fish farm effluent water - NA, UK, NA
  Aeromonas sp. CECT 7111 167 - - 154 71 148 141 107 60 130 Non-human, Oyster - Barcelona, Spain, NA
  A. media CCM 4242 173 - - 159 141 154 147 59 117 136 Environment, River water - NA, Czech Republic, 1991
A. tecta
(n=3)
A. tecta CECT 7082T 146 - - 134 117 128 123 90 95 112 Human, Stool ND Ticino, Switzerland, NA
  Aeromonas sp. CECT 7081 165 - - 152 134 146 139 105 110 128 Non-human, Fish ND Ticino, Switzerland, 1983
  Aeromonas sp. CECT 7083 166 - - 153 135 147 140 106 111 129 Environment, Tap water - Ticino, Switzerland, 1993
A. jandaei BVH92 67 - - 62 51 59 56 46 44 54 Human, Urine I Toulouse, Fr, 2006
(n=2) A. jandaei CECT 4228T 133 - - 123 105 117 111 82 83 103 Human, Stool ND Oregon, USA, 1980
A. enteropelogenes A. enteropelogenes CECT 4487 T 126 - - 116 98 110 104 76 79 97 Human, Stool ND NA, India, NA
A. trota A. trota CECT 4255 T 142 - - 130 113 124 119 76 92 109 Human, Stool ND Varasani, India, NA
A. bestiarum A. bestiarum CECT 4227T 122 - - 112 94 106 101 73 75 93 Non-human, Fish ND NA, Fr, 1974
A. encheleia A. encheleia CECT 4342T 125 - - 115 97 109 103 75 78 96 Non-human, Fish I Valencia, Spain, 1987
HG11 HG11 CECT 4253 147 - - 135 118 129 124 91 96 113 Human, Wound I New Zealand, 1983
A. eucrenophila A. eucrenophila CECT 4224T 127 - - 117 99 111 105 77 80 98 Non-human, Freshwater fish ND NA, NA, NA
A. fluvialis A. fluvialis LMG 24681 T 149 - - 137 120 131 126 93 98 115 Environmental, River water - Girona, Spain, NA
A. popoffii A. popoffi CIP 105493T 135 - - 125 106 119 113 84 85 104 Environmental, Water - Oelegem, Belgium, 1993
A. sanarellii A. sanarellii LMG 24682T 152 - - 140 123 134 129 96 101 118 Human, Wound I NA, Taïwan, 2000
A. schubertii A. schubertii CECT 4240T 140 - - 128 111 122 117 87 90 107 Human, Wound I Texas, USA, 1981
A. diversa HG13 CECT 4254T 148 - - 136 119 130 125 92 97 114 Human, Wound I Louisiana, USA, NA
A. taiwanensis A. taiwanensis LMG 24683T 150 - - 138 121 132 127 94 99 116 Human, Wound I NA, Taïwan, 2000
Unknown taxon A. bestiarum CCM 1271 169 - - 156 137 150 143 109 113 132 Non-human, Gold fish ND NA, NA, NA
A. bivalvium A. bivalvium CECT 7113T - - - 161 142 155 - 112 119 138 Non-human, Cockles - Barcelona, Spain, 1997
A. molluscorum A. molluscorum CIP 108876T - - - - 143 156 - 113 120 139 Non-human, Wedge-shells - Barcelona, Spain, 1997
A. simiae A. simiae CIP 107798T - - - 162 144 157 - 114 121 140 Non-human, Healthy monkey - NA, Mauritus, 1999
A. rivuli A. rivuli DSM 22539T - - - - 145 158 149 115 122 141 Environment, Karst hardwater creek - Westerhöfer Bach, Germany, NA
  1. For each strain, the table presents the results of the multilocus phylogenetic analysis (MLPA); the result of the multilocus sequence analysis (strain ST number and belonging to a clonal complex); the allelic number for each of the 7 genes; and the characteristics of strain isolation (origin, colonizing or infecting status, spatio-temporal origin).
  2. aCC(5): clonal complex defined by at least 5 identical alleles.
  3. bCC(4): clonal complex defined by at least 4 identical alleles.
  4. ND: not determined; NA: not available; -: not applicable.
  5. Names of strains and alleles concerned by recombination detected by phylogenetic incongruities are in bold type.
  6. All bacteremia originated from the gut [17].