Table 2 Genetic diversity of the selected loci among the Corynebacterium strains analysed
No. of strains | Locus | Fragment length (bp)£ | No. of alleles | Haplotype (gene) diversity ± SD | No. of polymorphic sites | Avg number of nucleotide differences | Nucleotide diversity ± SD |
|---|---|---|---|---|---|---|---|
56 (48) | 16S rDNA | 872 | 5 (1) | 0.722 ± 0.159 | 71 (0) | 31.972 | 0.037 ± 0.007 |
56 (49) | ITS1¥ | 360¥ | 17 (10) | - | - | - | - |
56 (49) | gyrA | 200 | 7 (3) | 0.604 ± 0.040 (0.527 ± 0.001) | 39 (3) | 2.452 (1.073) | 0.012 ± 0.006 (0.005 ± 0.000) |
56 (49) | rpoB | 380 | 7 (3) | 0.498 ± 0.076 (0.379 ± 0.079) | 116 (4) | 11.551 (0.912) | 0.0314 ± 0.012 (0.002 ± 0.000) |
56 (49) | hsp65 | 287 | 4 (1) | 0.138 ± 0.062 (0 ± 0) | 62 (0) | 6.199 (0) | 0.022 ± 0.011 (0 ± 0) |
35 (32) | sodA | 295 | 2 (1) | 0.057 ± 0.053 (0 ± 0) | 64 (0) | 3.657 (0) | 0.012 ± 0.011 (0 ± 0) |
53 (49) | ermX | 367 | 1 (1) | 0 ± 0 (0 ± 0) | 0 (0) | 0 (0) | 0 ± 0 (0 ± 0) |
41 (38) | aphA | 333 | 2 (2) | 0.095 ± 0.061 (0.053 ± 0.049) | 1 (1) | 0.095 (0.053) | 0.0003 ± 0.0002 (0 ± 0) |