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Table 1 Bacterial strains and plasmids used in this study

From: tkt1, located on a novel pathogenicity island, is prevalent in avian and human extraintestinal pathogenic Escherichia coli

Strain

Description

Reference

APEC O1

O1:K1:H7; fyuA, sitA, chuA, irp2, iroN, ireA, tsh, iucD, fimC, iss, ompA, vat, traT; contains four plasmids, including pAPEC-O1-ColBM

[14]

BJ502

E. coli K12, ΔtktA

[15]

DH5α

E. coli K12

 

APEC O1-M tkt1

APEC O1 derivative, Δtkt1

this study

APEC O1-M tktA

APEC O1 derivative, ΔtktA

this study

S17λpir

recA thi pro hsdR- M+ RP4::2-Tc::Mu::Km Tn7 lysogenized with λpir phage

[12]

S17pGP tkt1

S17λpir with plasmid pGP704 tkt1

this study

APEC O1-C tkt1

APEC O1 M tkt1 with plasmid pGP tkt1 inserted into bacterial chromosome

this study

APEC O1-P1

APEC O1 M tkt1 with plasmid pBAD tkt1

this study

BJ502-P1

BJ502 with plasmid pBAD24

this study

BJ502-P2

BJ502 with plasmid pBAD tkt1

this study

BJ502-P3

BJ502 with plasmid pBAD tktA

this study

APEC collection

452 APEC strains isolated from lesions of birds clinically diagnosed with colibacillosis

[17]

Avian fecal E. coli

106 avian fecal E. coli strains were isolated from the feces of apparently healthy birds

[17]

UPEC collection

200 uropathogenic E. coli strains from from MeritCare Medical Center in Fargo, North Dakota

[18]

NMEC collection

91 human neonatal meningitis-causing E. coli strains from the cerebrospinal fluid of newborns in the Netherlands, isolated from 1989 through 1997 and from Dr. K. S. Kim at John Hopkins.

[19]

Plasmids

  

pGP704

Apr, suicide plasmid

[20]

pBAD24

Apr, expression plasmid with arabinose-inducible promoter

[21]

pKD46

Apr; expresses λ red recombinase

[22]

pKD3

cat gene, template plasmid

[22]

pGP tkt1

pGP704 derivative harboring tkt1 gene

this study

pBAD tkt1

pBAD24 derivative, tkt1 gene under the control of PBAD

this study

pBAD tktA

pBAD24 derivative, tktA gene under the control of PBAD

this study