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Table 2 Descriptive statistics and genetic diversity of 'Candidatus Liberibacter asiaticus' isolates across seven microsatellite loci in the samples obtained from nine different countries from Asia, North (Florida, USA) and South Americas (São Paulo, Brazil)

From: Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide

Country

Location ID

Location Information

Total number of individuals

Number of individuals in clone corrected data

Alleles per locus

Haploid genetic diversity

Brazil

BRA

São Paulo

22

14

2.7

0.313

USA

FL-A

Charlotte County, Florida

5

4

1.6

0.161

 

FL-B

Collier County, Florida

46

11

2.1

0.234

 

FL-C

DeSoto County, Florida

30

5

1.7

0.194

 

FL-D

Hardee County, Florida

8

5

1.7

0.160

 

FL-E

Hendry County, Florida

13

5

1.6

0.171

 

FL-F

Highlands County, Florida

19

6

1.7

0.119

 

FL-G

Indian River, County, Florida

23

7

1.9

0.175

 

FL-H

Martin County, Florida

10

7

1.9

0.175

 

FL-I

Okechobee County, Florida

4

2

1.3

0.143

 

FL-J

Polk County, Florida

6

4

2.0

0.304

 

FL-K

St. Lucie County, Florida

6

4

1.4

0.179

 

FL-L

Pasco County, Florida

2

2

1.1

0.071

 

FL-M

Manatee County, Florida

2

2

1.3

0.143

 

FL-N

Hillsborough County, Florida

2

2

1.3

0.071

 

FL-O

Lake County, Florida

1

1

1.0

0.000

 

USA-Florida-overall

177

67

3.6

0.247

CHINA

CHN-A

Baise, Guangxi Province

3

2

1.1

0.071

 

CHN-B

Guilin, Guangxi Province

3

3

1.4

0.190

 

CHN-C

Hezhou, Guangxi Province

3

2

1.3

0.143

 

CHN-D

Nanning, Guangxi province

14

14

3.0

0.276

 

CHN-E

Fuzhou, Fujian Province

7

5

2.1

0.320

 

CHN-F

Tangshan, Yunnan Province

3

2

1.3

0.143

 

CHN-G

Gangzhoou, Jiangxi Province

1

1

1.0

0.000

 

CHN-H

Guangzhou, Guangdong Province

1

1

1.0

0.000

 

CHN-I

Hunan Province

1

1

1.0

0.000

 

China-overall

36

31

5.7

0.342

CAMBODIA

CAM-A

Pursat Province

7

6

2.4

0.341

 

CAM-B

Battambang Province

4

4

1.9

0.304

 

Cambodia-overall

11

10

3.1

0.423

VIETNAM

VIET

Hung Yen Province, Hoa Binh Province, Hanoi

3

3

1.9

0.317

THAILAND

THAI

Unknown

1

1

1.0

0.000

TAIWAN

TIW

Unknown

1

1

1.0

0.000

JAPAN

JPN

Unknown

1

1

1.0

0.000

INDIA

IND-A

Anantapur District, Andhra Pradesh

7

7

2.4

0.297

 

IND-B

Chittoor District, Andhra Pradesh

6

6

2.0

0.254

 

IND-C

Kadapa District, Andhra Pradesh

4

4

1.9

0.250

 

IND-D

Mahaboobnagar District, Andhra Pradesh

3

3

1.4

0.159

 

IND-E

Nalgonda District, Andhra Pradesh

4

4

1.7

0.196

 

IND-F

Prakasam District, Andhra Pradesh

4

3

2.4

0.540

 

IND-G

Tirupati District, Andhra Pradesh

5

5

2.0

0.274

 

IND-H

Kurnool District, Andhra Pradesh

1

1

1.0

0.000

 

IND-I

Ludhiana District, Punjab

1

1

1.0

0.000

 

India-overall

35

34

5.4

0.360

  1. Allele per locus: average number of alleles per locus
  2. Clone corrected data (removed repeated genotypes within a population)