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Table 2 Descriptive statistics and genetic diversity of 'Candidatus Liberibacter asiaticus' isolates across seven microsatellite loci in the samples obtained from nine different countries from Asia, North (Florida, USA) and South Americas (São Paulo, Brazil)

From: Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide

Country Location ID Location Information Total number of individuals Number of individuals in clone corrected data Alleles per locus Haploid genetic diversity
Brazil BRA São Paulo 22 14 2.7 0.313
USA FL-A Charlotte County, Florida 5 4 1.6 0.161
  FL-B Collier County, Florida 46 11 2.1 0.234
  FL-C DeSoto County, Florida 30 5 1.7 0.194
  FL-D Hardee County, Florida 8 5 1.7 0.160
  FL-E Hendry County, Florida 13 5 1.6 0.171
  FL-F Highlands County, Florida 19 6 1.7 0.119
  FL-G Indian River, County, Florida 23 7 1.9 0.175
  FL-H Martin County, Florida 10 7 1.9 0.175
  FL-I Okechobee County, Florida 4 2 1.3 0.143
  FL-J Polk County, Florida 6 4 2.0 0.304
  FL-K St. Lucie County, Florida 6 4 1.4 0.179
  FL-L Pasco County, Florida 2 2 1.1 0.071
  FL-M Manatee County, Florida 2 2 1.3 0.143
  FL-N Hillsborough County, Florida 2 2 1.3 0.071
  FL-O Lake County, Florida 1 1 1.0 0.000
  USA-Florida-overall 177 67 3.6 0.247
CHINA CHN-A Baise, Guangxi Province 3 2 1.1 0.071
  CHN-B Guilin, Guangxi Province 3 3 1.4 0.190
  CHN-C Hezhou, Guangxi Province 3 2 1.3 0.143
  CHN-D Nanning, Guangxi province 14 14 3.0 0.276
  CHN-E Fuzhou, Fujian Province 7 5 2.1 0.320
  CHN-F Tangshan, Yunnan Province 3 2 1.3 0.143
  CHN-G Gangzhoou, Jiangxi Province 1 1 1.0 0.000
  CHN-H Guangzhou, Guangdong Province 1 1 1.0 0.000
  CHN-I Hunan Province 1 1 1.0 0.000
  China-overall 36 31 5.7 0.342
CAMBODIA CAM-A Pursat Province 7 6 2.4 0.341
  CAM-B Battambang Province 4 4 1.9 0.304
  Cambodia-overall 11 10 3.1 0.423
VIETNAM VIET Hung Yen Province, Hoa Binh Province, Hanoi 3 3 1.9 0.317
THAILAND THAI Unknown 1 1 1.0 0.000
TAIWAN TIW Unknown 1 1 1.0 0.000
JAPAN JPN Unknown 1 1 1.0 0.000
INDIA IND-A Anantapur District, Andhra Pradesh 7 7 2.4 0.297
  IND-B Chittoor District, Andhra Pradesh 6 6 2.0 0.254
  IND-C Kadapa District, Andhra Pradesh 4 4 1.9 0.250
  IND-D Mahaboobnagar District, Andhra Pradesh 3 3 1.4 0.159
  IND-E Nalgonda District, Andhra Pradesh 4 4 1.7 0.196
  IND-F Prakasam District, Andhra Pradesh 4 3 2.4 0.540
  IND-G Tirupati District, Andhra Pradesh 5 5 2.0 0.274
  IND-H Kurnool District, Andhra Pradesh 1 1 1.0 0.000
  IND-I Ludhiana District, Punjab 1 1 1.0 0.000
  India-overall 35 34 5.4 0.360
  1. Allele per locus: average number of alleles per locus
  2. Clone corrected data (removed repeated genotypes within a population)
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BMC Microbiology

ISSN: 1471-2180

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