Phylogenetic affiliation | dTRF (bp) | dTRF shifteda(bp) | Countsb(−) | Relative contribution to T-RFc(%) | Reference OTUd | Reference GenBank accession numbere | SW mapping scoref(−) | Normalized SW mapping scoreg(−) |
---|---|---|---|---|---|---|---|---|
Flocculent and aerobic granular sludge samples from wastewater treatment systems | ||||||||
Rhodocyclus tenuis | 39 | 34 | 37 | 4.8 | 3160 | AB200295 | 363 | 0.917 |
 | 199 | 194 | 1 | 25.0 | 3160 | AB200295 | 248 | 0.648 |
 | 205 | 200 | 3 | 100.0 | 3160 | AF204247 | 314 | 0.858 |
 | 210 | 205 | 1 | 100.0 | 3160 | AF204247 | 211 | 0.699 |
 | 218 | 213 | 11 | 91.7 | 3160 | AB200295 | 356 | 0.942 |
 | 219 | 214 | 769 | 99.6 | 3160 | AB200295 | 371 | 0.949 |
 | 220 | 215 | 6 | 37.5 | 3160 | AF502230 | 318 | 0.817 |
 | 221 | 216 | 1 | 7.7 | 3160 | AF502230 | 276 | 0.865 |
 | 225 | 220 | 2 | 3.7 | 3160 | AB200295 | 206 | 0.703 |
 | 252 | 247 | 3 | 100.0 | 3160 | AB200295 | 305 | 0.762 |
 | 253 | 248 | 9 | 100.0 | 3160 | AB200295 | 228 | 0.752 |
 | 257 | 252 | 1 | 20.0 | 3160 | AF502230 | 241 | 0.660 |
Groundwater samples from aquifers contaminated with chloroethenes | ||||||||
Dehalococcoides spp. | 166 | 161 | 1 | 100.0 | 1368 | EF059529 | 290 | 0.775 |
 | 168 | 163 | 143 | 100.0 | 1368 | EF059529 | 241 | 0.717 |
 | 169 | 164 | 2 | 100.0 | 1368 | EF059529 | 331 | 0.768 |
 | 170 | 165 | 2 | 100.0 | 1368 | EF059529 | 241 | 0.693 |
 | 171 | 166 | 1 | 50.0 | 1368 | EF059529 | 303 | 0.783 |
 | 173 | 168 | 1 | 100.0 | 1368 | EF059529 | 241 | 0.717 |
 | 176 | 171 | 1 | 100.0 | 1369 | DQ833317 | 211 | 0.687 |
 | 179 | 174 | 1 | 100.0 | 1369 | DQ833317 | 193 | 0.629 |
 | 188 | 183 | 4 | 66.7 | 1369 | DQ833340 | 464 | 0.947 |