Table 2 Homology comparison of nucleotide (below the diagonal) and amino acid sequences (above the diagonal) of non-structural protein gene nsP3 of YN08 isolates Getah virus with other Alphavirus isolates
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
|---|---|---|---|---|---|---|---|---|---|
1. AlpV_M1 | 99.07% | 98.89% | 98.89% | 99.07% | 100% | 98.89% | 98.70% | 99.07% | |
2. GETV_S_Korea | 98.4% | 99.63% | 99.07% | 99.63% | 99.07% | 99.82% | 99.44% | 98.89% | |
3. GETV_HB0234 | 98.1% | 99.4% | 98.89% | 99.26% | 98.89% | 99.44% | 99.44% | 98.70% | |
4. GETV_LEIV_16275_MAG | 97.9% | 97.4% | 97.2% | 99.07% | 98.89% | 98.89% | 98.70% | 99.07% | |
5. GETV_LEIV_17741_MPR | 98.6% | 98.8% | 98.5% | 97.9% | 99.07% | 99.44% | 99.07% | 98.89% | |
6. GETV_M1 | 99.9% | 98.5% | 98.2% | 98.0% | 98.7% | 98.89% | 98.70% | 99.07% | |
7. GETV_YN08 | 98.0% | 99.3% | 99.3% | 97.1% | 98.3% | 98.1% | 99.26% | 98.70% | |
8. GETV_YN0540 | 98.1% | 99.4% | 99.1% | 97.2% | 98.5% | 98.2% | 99.0% | 98.51% | |
9. SAGV | 98.1% | 97.5% | 97.2% | 98.5% | 97.9% | 98.2% | 97.1% | 97.2% |