| n-RT | RT | RT-h | n-ST | ST | ST-h | θ | π | plasmid |
---|
All | 83 | 17 | 0.90 | 46 | 16 | 0.76 | 0.0127 | 0.0111 | 15 |
Bovine* | 56 | 4 | 0.67 | 19 | 3 | 0.49 | 0.0089 | 0.0127 | 7 |
Canine | 26 | 13 | 0.88 | 26 | 14 | 0.90 | 0.0139 | 0.0094 | 7 |
Feline | 1 | 1 | Â | 1 | 1 | Â | Â | Â | 1 |
- n-RT = number of isolates ribotyped.
- n-ST = number of isolates sequence typed.
- RT = number of ribotypes.
- RT-h = ribotype (gene) diversity.
- ST = number of STs.
- ST-h = ST (gene) diversity.
- θ = population parameter theta (per site).
- π = nucleotide diversity.
- plasmid = number of strains containing the plasmid.
- *The bovine isolates represent 18 distinct herds (farms). With one exception a single ST was obtained from each herd (two STs were obtained from one herd) (see Methods).