Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions

Crabbé, Aurélie; Leroy, Baptiste; Wattiez, Ruddy; Aertsen, Abram; Leys, Natalie; Cornelis, Pierre; Van Houdt, Rob

doi:10.1186/1471-2180-12-282

BMC Microbiology

Table 1 Comparative proteome profile of P. putida grown at 50 rpm and 150 rpm

From: Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions

Locus tag	Protein name	Accession number	Fold-change	Protein function
*Up-regulated proteins (50 rpm/150 rpm)*
PP_0234	OprE	gi\|26986977	2.41*	Outer membrane porin
PP_0268	OprQ	gi\|26987010	1.80	Outer membrane porin
PP_0465	RplX	gi\|26987206	1.61	50S ribosomal protein L24
PP_0812	CyoA	gi\|26987548	1.82	Ubiquinol oxidase subunit 2
PP_0988	GcvP-1	gi\|26987724	2.53	Glycine dehydrogenase
PP_1037	PurL	gi\|26987773	1.59*	Phosphoribosylformylglycinamidine synthase
PP_1099		gi\|26987835	1.74	Cold-shock domain-contain protein
PP_1629	RecA	gi\|26988361	2.35*	Recombinase A
PP_1868		gi\|26988598	2.25*	DEAD-box ATP dependent DNA helicase
PP_1982	IbpA	gi\|26988708	8.33*	Heat shock protein Hsp20
PP_2468	RplT	gi\|26989191	1.64	50S ribosomal protein L20
PP_2645	MgtB	gi\|26989364	2.67*	Magnesium-translocating P-type ATPase
PP_2656	PstS	gi\|26989375	4.26*	Phosphate ABC transporter, periplasmic phosphate-binding protein
PP_4718	FtsH	gi\|26991401	2.04	ATP-dependent metalloprotease FtsH
PP_4803	DacA	gi\|26991483	1.96*	Serine-type D-Ala-D-Ala carboxypeptidase
PP_5329	PstS	gi\|26992005	3.33*	Phosphate ABC transporter phosphate-binding protein
PP_0460		gi\|24981839	1.65	Ribosomal protein S3
*Down-regulated proteins (50 rpm/150 rpm)*
PP_0126		gi\|26986871	0.37*	Cytochrome c4
PP_0258		gi\|26987000	0.21*	Hypothetical protein PP_0258
PP_0296		gi\|26987038	0.36*	Glycine betaine/L-proline ABC transporter, periplasmic binding protein
PP_0308		gi\|26987050	0.37	Membrane dipeptidase
PP_0315		gi\|26987057	0.22	Rieske (2Fe-2S) domain protein
PP_0322	GlyA-1	gi\|26987064	0.44	Serine hydroxymethyltransferase
PP_0328	FdhA	gi\|26987070	0.38*	Formaldehyde dehydrogenase, glutathione-independent
PP_0382		gi\|26987124	0.41	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
PP_0395		gi\|26987137	0.19	Hypothetical protein PP_0395
PP_0397		gi\|26987139	0.28*	Putative serine protein kinase, PrkA
PP_0541		gi\|26987279	0.28	Acetyltransferase
PP_0545		gi\|26987283	0.43*	Aldehyde dehydrogenase family protein
PP_0763		gi\|26987499	0.50	Acyl-CoA synthetase
PP_0765		gi\|26987501	0.45*	Hypothetical protein PP_0765
PP_0951	RpoX	gi\|26987687	0.34*	Sigma 54 modulation protein/ribosomal protein S30EA
PP_0999	ArcC	gi\|26987735	0.23*	Carbamate kinase
PP_1000	ArgI	gi\|26987736	0.28*	Ornithine carbamoyltransferase
PP_1001	ArcA	gi\|26987737	0.24*	Arginine deiminase
PP_1015		gi\|26987751	0.52	Sugar ABC transporter, periplasmic sugar-binding protein
PP_1081		gi\|26987817	0.44*	Glutaredoxin-related protein
PP_1084		gi\|26987820	0.42	Anti-oxidant AhpCTSA family protein
PP_1122		gi\|26987858	0.22	OmpA/MotB domain protein
PP_1210		gi\|26987945	0.32*	DNA-binding stress protein, putative
PP_1478		gi\|26988211	0.23*	NADH:flavin oxidoreductase/NADH oxidase
PP_1487		gi\|26988220	0.40*	Hypothetical protein PP_1487
PP_1506	Adk	gi\|26988238	0.34*	Adenylate kinase
PP_1661		gi\|26988393	0.41*	Dehydrogenase subunit, putative
PP_1741		gi\|26988472	0.28*	Substrate-binding region of ABC-type glycine betaine transport system
PP_1859	Ohr	gi\|26988589	0.16*	OsmC family protein
PP_2006		gi\|26988731	0.12*	Hypothetical protein PP_2006
PP_2105		gi\|26988830	0.48	Hypothetical protein PP_2105
PP_2112	AcnA	gi\|26988836	0.42*	Aconitate hydratase
PP_2140		gi\|26988864	0.47	Hypothetical protein PP_2140
PP_2303	HupB	gi\|26989027	0.52	Histone family protein DNA-binding protein
PP_3089		gi\|26989808	0.37*	Hypothetical protein PP_3089
PP_3232		gi\|26989950	0.16*	Acetyltransferase
PP_3283	PhaB	gi\|26990001	0.21*	Enoyl-CoA hydratase
PP_3433	Hpd	gi\|26990146	0.25*	4-hydroxyphenylpyruvate dioxygenase
PP_3611		gi\|26990322	0.12*	Hypothetical protein PP_3611
PP_3668		gi\|26990379	0.28*	Catalase/peroxidase HPI
PP_3765		gi\|26990470	0.24*	Transcriptional regulator MvaT, P16 subunit, putative
PP_3839	AdhA	gi\|26990544	0.30*	Alcohol dehydrogenase
PP_4011	Icd	gi\|26990716	0.25*	Isocitrate dehydrogenase, NADP-dependent
PP_4034		gi\|26990737	0.38*	Allantoate amidohydrolase
PP_4037		gi\|26990739	0.32*	Putative oxidoreductase
PP_4038		gi\|26990740	0.26*	Dihydropyrimidine dehydrogenase
PP_4116	AceA	gi\|26990810	0.27*	Isocitrate lyase
PP_4486		gi\|26991172	0.51	Cationic amino acid ABC transporter, periplasmic binding protein
PP_4490	PhhA	gi\|26991176	0.47*	Phenylalanine 4-monooxygenase
PP_4593		gi\|26991277	0.20*	Hypothetical protein PP_4593
PP_4666	MmsB	gi\|26991350	0.24*	3-hydroxyisobutyrate dehydrogenase
PP_4667	MmsA-2	gi\|26991351	0.28*	Methylmalonate-semialdehyde dehydrogenase
PP_4848		gi\|26991528	0.54	DnaJ family curved-DNA-binding protein
PP_4870		gi\|26991550	0.38*	Azurin
PP_5007		gi\|26991684	0.33*	Poly(hydroxyalkanoate) granule-associated protein
PP_5220	ElbB	gi\|26991896	0.45	Isoprenoid biosynthesis protein
PP_5232		gi\|26991908	0.48	Hypothetical protein PP_5232
PP_5258		gi\|26991934	0.27*	Aldehyde dehydrogenase family protein
PP_5260		gi\|26991936	0.24*	Hypothetical protein PP_5260

* P-value < 0.05.

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