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Table 1 Haemophilus strains selected for study
| Strain name | Type | Geographic location | Year | Length of sequence (Mb) | Disease/ Site of isolation |
|---|---|---|---|---|---|
| RM7190 | a | Malaysia | 1973 | 1.5 | meningitis |
| RM6062 | a | England | 1965 | 1.5 | nasopharynx |
| RM6064 | a | England | 1966 | 1.5 | pleural fluid |
| RM6073 | a | England | 1966 | 1.6 | bronchitis |
| RM7017 | b | Ghana | 1983 | 1.6 | CSF |
| RM7060 | b | New York, USA | 1971 | 1.5 | nasopharynx |
| RM7414 | b | Kenya | 1980’s | 1.5 | |
| RM7419 | b | Kenya | 1980’s | 1.5 | |
| RM7651 | b | Norway | 1976 | 1.7 | |
| DC11238 | b | UK | 2003 | 1.8 | meningitis |
| DC800 | b | UK | 1989 | 1.9 | meningitis |
| DC8708 | b | UK | 2000 | 1.8 | |
| DCG1574 | b | Gambia | 1993 | 1.8 | nasopharynx |
| Eagan | b | 1.5 | |||
| RM7578 | b | Switzerland | 1983 | 1.8 | |
| RM7582 | b | RSA | 1980’s | 1.8 | |
| RM7598 | b | USA | 1985 | 1.8 | |
| RM7018 | b* | Ghana | 1983 | 1.4 | CSF |
| RM7122 | b* | Australia | <1984 | 1.5 | meningitis |
| RM7459 | b* | Iceland | 1984 | 1.4 | CSF |
| RM7465 | b* | Iceland | 1985 | 1.6 | CSF |
| RM7617 | b* | Malaysia | 1970’s | 1.5 | CSF |
| RM6132 | c | England | 1964 | 1.6 | chronic sinusitis |
| RM6134 | c | England | 1975 | 1.4 | abscess |
| RM7422 | c | Kenya | 1986 | 1.4 | |
| RM6158 | e | England | 1962 | 1.7 | cystic fibrosis |
| RM6237 | f | England | 1963 | 1.4 | nasal discharge |
| RM7283 | f | Malaysia | 1972 | 1.5 | trachea |
| RM7290 | f | Malaysia | 1974 | 1.5 | trachea(malnutrition) |
| PLMIOG2822H-L | H. haemolyticus | 1.6 | |||
| PLh.hlnctc10659T | H. haemolyticus | 1.6 | |||
| PLHparaphorH-L | H. paraphrophilus | 1.7 | |||
| PLMIOG2838H-L | H. haemolyticus | 1.4 | |||
| DCMO-099-5-LST-8 | H. parainfluenzae | UK | 1997 | 1.7 | nasopharynx (commensal) |
| DCMO-099-8-MST-8 | H. parainfluenzae | UK | 1997 | 1.6 | nasopharynx (commensal) |
| DCO-CFE24-1-T2ST-27 | H. parainfluenzae | UK | 2001 | 1.8 | nasopharynx (commensal) |
| DCO-OM30-1-A1 | H. parainfluenzae | UK | 2001 | 1.6 | nasopharynx (commensal) |
| DCT2T1ST-34 | H. parainfluenzae | Gambia | 2001 | 1.9 | nasopharynx (commensal) |
| DCT5A1ST-41 | H. parainfluenzae | Gambia | 2001 | 1.9 | nasopharynx (commensal) |
| DCT7B2ST-47 | H. parainfluenzae | Gambia | 2001 | 1.8 | nasopharynx (commensal) |
| DCT8A1ST-52 | H. parainfluenzae | Gambia | 2001 | 1.9 | nasopharynx (commensal) |
| RY15 | H. parainfluenzae | 1.7 | nasopharynx (commensal) | ||
| RY20 | H. parainfluenzae | 1.7 | nasopharynx (commensal) | ||
| RY22 | H. parainfluenzae | 1.9 | nasopharynx (commensal) | ||
| RY8 | H. parainfluenzae | 1.7 | nasopharynx (commensal) | ||
| DCT2B3ST-33 | hybrid | Gambia | 2001 | 1.4 | nasopharynx (commensal) |
| DCG-T53T1 | hybrid | Gambia | 2001 | 1.5 | nasopharynx (commensal) |
| DCT8B3ST-51 | hybrid | Gambia | 2001 | 1.5 | nasopharynx (commensal) |
| DH1500spain | NTHi | Spain | 2000 | 1.4 | COPD |
| DH1559spain | NTHi | Spain | 2000 | 1.5 | COPD |
| DH1630spain | NTHi | Spain | 2000 | 1.3 | COPD |
| DH398spain | NTHi | Spain | 2000 | 1.5 | COPD |
| Fi176 | NTHi | Finland | 1995 | 1.5 | otitis media |
| Fi723 | NTHi | Finland | 1995 | 1.6 | otitis media |
| Fi981 | NTHi | Finland | 1995 | 1.7 | otitis media |
| RM6011 | NTHi | UK | 1984 | 1.3 | meningitis |
| RM6019 | NTHi | UK | 1984 | 1.3 | meningitis |
| RM6033 | NTHi | UK | 1984 | 1.5 | pus hydrosalpinx |
| RM6051 | NTHi | UK | 1985 | 1.5 | CSF |
| RM7028 | NTHi | PNG | 1980’s | 1.5 | blood |
| RM7308 | NTHi | South Korea | 1984 | 1.5 | nasopharynx |
| RM7309 | NTHi | South Korea | 1984 | 1.5 | nasopharynx |
| RM7347 | NTHi | USA | 1985 | 1.4 | sputum |
| RM7448 | NTHi | Iceland | 1978 | 1.4 | blood |
| RM7477 | NTHi | Iceland | 1986 | 1.6 | |
| RM7490 | NTHi | RSA | 1980’s | 1.6 | CSF |
| DH1513spain | NTHi | Spain | 2000 | 1.5 | COPD |
| Fi1180 | NTHi | Finland | 1995 | 1.6 | otitis media |
| Fi162 | NTHi | Finland | 1995 | 1.7 | otitis media |
| Fi667 | NTHi | Finland | 1995 | 1.7 | otitis media |
| RM7029 | NTHi | PNG | 1980’s | 1.6 | blood |
| RM7637 | NTHi | China | 1971 | 1.4 | sputum |
| DC7331 | NTHi | UK | 1997 | 1.8 | meningitis |
| DC7654 | NTHi | UK | 1997 | 1.8 | blood |
| DC7695 | NTHi | UK | 1997 | 1.9 | CSF |
| DCg2120 | NTHi | Gambia | 1.8 | nasopharynx | |
| DCH3151 | NTHi | Gambia | 1993 | 1.8 | pneumonia |
| DCO-OM33-2B3ST-21 | NTHi | UK | 2001 | 1.5 | nasopharynx |
| PLMIOG2819 | 1.5 | ||||
| PLMIOG2820 | 1.5 | ||||
| RM6006 | 1.4 | ||||
| PLMIOG2836 | 1.7 | ||||
| DCMO-009-14-S-TR-ST-12 | UK | 1998 | 1.6 | nasopharynx | |
| PL10839T | 1.6 | ||||
| PLMIOG2837 | 1.6 | ||||
| RM7054 | NTHi | USA | 1984 | blood (sepsis) | |
| Fi1247 | NTHi | Finland | 1995 | otitis media | |
| Fi1124 | NTHi | Finland | 1995 | otitis media | |
| Fi486 | NTHi | Finland | 1995 | otitis media | |
| Fi432 | NTHi | Finland | 1995 | otitis media | |
| RM7068 | NTHi | PNG | pneumonia | ||
| Fi285 | NTHi | Finland | 1995 | otitis media | |
| PP H.parasuis | NTHi | ||||
| RM7876 | |||||
| Fi1200 | NTHi | Finland | 1995 | otitis media | |
| RM7066 |
