|
Strain name
|
Type
|
Geographic location
|
Year
|
Length of sequence (Mb)
|
Disease/ Site of isolation
|
|---|
|
RM7190
|
a
|
Malaysia
|
1973
|
1.5
|
meningitis
|
|
RM6062
|
a
|
England
|
1965
|
1.5
|
nasopharynx
|
|
RM6064
|
a
|
England
|
1966
|
1.5
|
pleural fluid
|
|
RM6073
|
a
|
England
|
1966
|
1.6
|
bronchitis
|
|
RM7017
|
b
|
Ghana
|
1983
|
1.6
|
CSF
|
|
RM7060
|
b
|
New York, USA
|
1971
|
1.5
|
nasopharynx
|
|
RM7414
|
b
|
Kenya
|
1980’s
|
1.5
| |
|
RM7419
|
b
|
Kenya
|
1980’s
|
1.5
| |
|
RM7651
|
b
|
Norway
|
1976
|
1.7
| |
|
DC11238
|
b
|
UK
|
2003
|
1.8
|
meningitis
|
|
DC800
|
b
|
UK
|
1989
|
1.9
|
meningitis
|
|
DC8708
|
b
|
UK
|
2000
|
1.8
| |
|
DCG1574
|
b
|
Gambia
|
1993
|
1.8
|
nasopharynx
|
|
Eagan
|
b
| | |
1.5
| |
|
RM7578
|
b
|
Switzerland
|
1983
|
1.8
| |
|
RM7582
|
b
|
RSA
|
1980’s
|
1.8
| |
|
RM7598
|
b
|
USA
|
1985
|
1.8
| |
|
RM7018
|
b*
|
Ghana
|
1983
|
1.4
|
CSF
|
|
RM7122
|
b*
|
Australia
|
<1984
|
1.5
|
meningitis
|
|
RM7459
|
b*
|
Iceland
|
1984
|
1.4
|
CSF
|
|
RM7465
|
b*
|
Iceland
|
1985
|
1.6
|
CSF
|
|
RM7617
|
b*
|
Malaysia
|
1970’s
|
1.5
|
CSF
|
|
RM6132
|
c
|
England
|
1964
|
1.6
|
chronic sinusitis
|
|
RM6134
|
c
|
England
|
1975
|
1.4
|
abscess
|
|
RM7422
|
c
|
Kenya
|
1986
|
1.4
| |
|
RM6158
|
e
|
England
|
1962
|
1.7
|
cystic fibrosis
|
|
RM6237
|
f
|
England
|
1963
|
1.4
|
nasal discharge
|
|
RM7283
|
f
|
Malaysia
|
1972
|
1.5
|
trachea
|
|
RM7290
|
f
|
Malaysia
|
1974
|
1.5
|
trachea(malnutrition)
|
|
PLMIOG2822H-L
|
H. haemolyticus
| | |
1.6
| |
|
PLh.hlnctc10659T
|
H. haemolyticus
| | |
1.6
| |
|
PLHparaphorH-L
|
H. paraphrophilus
| | |
1.7
| |
|
PLMIOG2838H-L
|
H. haemolyticus
| | |
1.4
| |
|
DCMO-099-5-LST-8
|
H. parainfluenzae
|
UK
|
1997
|
1.7
|
nasopharynx (commensal)
|
|
DCMO-099-8-MST-8
|
H. parainfluenzae
|
UK
|
1997
|
1.6
|
nasopharynx (commensal)
|
|
DCO-CFE24-1-T2ST-27
|
H. parainfluenzae
|
UK
|
2001
|
1.8
|
nasopharynx (commensal)
|
|
DCO-OM30-1-A1
|
H. parainfluenzae
|
UK
|
2001
|
1.6
|
nasopharynx (commensal)
|
|
DCT2T1ST-34
|
H. parainfluenzae
|
Gambia
|
2001
|
1.9
|
nasopharynx (commensal)
|
|
DCT5A1ST-41
|
H. parainfluenzae
|
Gambia
|
2001
|
1.9
|
nasopharynx (commensal)
|
|
DCT7B2ST-47
|
H. parainfluenzae
|
Gambia
|
2001
|
1.8
|
nasopharynx (commensal)
|
|
DCT8A1ST-52
|
H. parainfluenzae
|
Gambia
|
2001
|
1.9
|
nasopharynx (commensal)
|
|
RY15
|
H. parainfluenzae
| | |
1.7
|
nasopharynx (commensal)
|
|
RY20
|
H. parainfluenzae
| | |
1.7
|
nasopharynx (commensal)
|
|
RY22
|
H. parainfluenzae
| | |
1.9
|
nasopharynx (commensal)
|
|
RY8
|
H. parainfluenzae
| | |
1.7
|
nasopharynx (commensal)
|
|
DCT2B3ST-33
|
hybrid
|
Gambia
|
2001
|
1.4
|
nasopharynx (commensal)
|
|
DCG-T53T1
|
hybrid
|
Gambia
|
2001
|
1.5
|
nasopharynx (commensal)
|
|
DCT8B3ST-51
|
hybrid
|
Gambia
|
2001
|
1.5
|
nasopharynx (commensal)
|
|
DH1500spain
|
NTHi
|
Spain
|
2000
|
1.4
|
COPD
|
|
DH1559spain
|
NTHi
|
Spain
|
2000
|
1.5
|
COPD
|
|
DH1630spain
|
NTHi
|
Spain
|
2000
|
1.3
|
COPD
|
|
DH398spain
|
NTHi
|
Spain
|
2000
|
1.5
|
COPD
|
|
Fi176
|
NTHi
|
Finland
|
1995
|
1.5
|
otitis media
|
|
Fi723
|
NTHi
|
Finland
|
1995
|
1.6
|
otitis media
|
|
Fi981
|
NTHi
|
Finland
|
1995
|
1.7
|
otitis media
|
|
RM6011
|
NTHi
|
UK
|
1984
|
1.3
|
meningitis
|
|
RM6019
|
NTHi
|
UK
|
1984
|
1.3
|
meningitis
|
|
RM6033
|
NTHi
|
UK
|
1984
|
1.5
|
pus hydrosalpinx
|
|
RM6051
|
NTHi
|
UK
|
1985
|
1.5
|
CSF
|
|
RM7028
|
NTHi
|
PNG
|
1980’s
|
1.5
|
blood
|
|
RM7308
|
NTHi
|
South Korea
|
1984
|
1.5
|
nasopharynx
|
|
RM7309
|
NTHi
|
South Korea
|
1984
|
1.5
|
nasopharynx
|
|
RM7347
|
NTHi
|
USA
|
1985
|
1.4
|
sputum
|
|
RM7448
|
NTHi
|
Iceland
|
1978
|
1.4
|
blood
|
|
RM7477
|
NTHi
|
Iceland
|
1986
|
1.6
| |
|
RM7490
|
NTHi
|
RSA
|
1980’s
|
1.6
|
CSF
|
|
DH1513spain
|
NTHi
|
Spain
|
2000
|
1.5
|
COPD
|
|
Fi1180
|
NTHi
|
Finland
|
1995
|
1.6
|
otitis media
|
|
Fi162
|
NTHi
|
Finland
|
1995
|
1.7
|
otitis media
|
|
Fi667
|
NTHi
|
Finland
|
1995
|
1.7
|
otitis media
|
|
RM7029
|
NTHi
|
PNG
|
1980’s
|
1.6
|
blood
|
|
RM7637
|
NTHi
|
China
|
1971
|
1.4
|
sputum
|
|
DC7331
|
NTHi
|
UK
|
1997
|
1.8
|
meningitis
|
|
DC7654
|
NTHi
|
UK
|
1997
|
1.8
|
blood
|
|
DC7695
|
NTHi
|
UK
|
1997
|
1.9
|
CSF
|
|
DCg2120
|
NTHi
|
Gambia
| |
1.8
|
nasopharynx
|
|
DCH3151
|
NTHi
|
Gambia
|
1993
|
1.8
|
pneumonia
|
|
DCO-OM33-2B3ST-21
|
NTHi
|
UK
|
2001
|
1.5
|
nasopharynx
|
|
PLMIOG2819
| | | |
1.5
| |
|
PLMIOG2820
| | | |
1.5
| |
|
RM6006
| | | |
1.4
| |
|
PLMIOG2836
| | | |
1.7
| |
|
DCMO-009-14-S-TR-ST-12
| |
UK
|
1998
|
1.6
|
nasopharynx
|
|
PL10839T
| | | |
1.6
| |
|
PLMIOG2837
| | | |
1.6
| |
|
RM7054
|
NTHi
|
USA
|
1984
| |
blood (sepsis)
|
|
Fi1247
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
Fi1124
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
Fi486
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
Fi432
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
RM7068
|
NTHi
|
PNG
| | |
pneumonia
|
|
Fi285
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
PP H.parasuis
|
NTHi
| | | | |
|
RM7876
| | | | | |
|
Fi1200
|
NTHi
|
Finland
|
1995
| |
otitis media
|
|
RM7066
| | | | | |
- The 96 strains selected for genome sequencing are listed along with respective information on serotype, isolation, and associated disease. The total length of the genome sequence following assembly is listed (to the nearest 0.1 Mbp) for each strain. The 11 strains below the horizontal line are those for which the quality of the assembled genome sequence was insufficient for the sequence data to be included in subsequent analyses.
- * Strains were originally designated as NT.
