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Table 3 SNPs found in gyrA and gyrB genes for M. avium subsp. paratuberculosis strain K-10 and M. avium subsp. paratuberculosis types I and III

From: Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosisstrains

Strains

Type

IS900RFLP profiles

gyrA

gyrB

position 1822

1986

1353

1626

K10*

II

R01

CCCGAGGAGCGGATCGCT-

ACTCGTGGGCGCGGTGTTGT

CCGGTCGACCGATCCGCGC-

CCAGCACATCTCGACGCTGT

6756

I

S1

.....A....-

..........

......C...-

..........

6759

I

S1

.....A....-

..........

......C...-

..........

P133/79

I

S2

.....A....-

..........

......C...-

..........

21P

I

S2

.....A....-

..........

......C...-

..........

235 G

I

S2

.....A....-

..........

......C...-

..........

M189

I

S2

.....A....-

..........

......C...-

..........

M15/04

I

S2

.....A....-

..........

......C...-

..........

M254/04

I

S2

.....A....-

..........

......C...-

..........

M71/03

I

S2

.....A....-

..........

......C...-

..........

M72/03

I

S2

.....A....-

..........

......C...-

..........

22 G

III

A

.....A....-

.....T.....

......C...-

.....T.....

OVICAP16

III

A

.....A....-

.....T.....

......C...-

.....T.....

OVICAP49

III

A

.....A....-

.....T.....

......C...-

.....T.....

21I

III

B

.....A....-

.....T.....

......C...-

.....T.....

PCR311

III

B

.....A....-

.....T.....

......C...-

.....T.....

19I

III

C

.....A....-

.....T.....

......C...-

.....T.....

85/14

III

C

.....A....-

.....T.....

......C...-

.....T.....

OVICAP34

III

D

.....A....-

.....T.....

......C...-

.....T.....

18I

III

E

.....A....-

.....T.....

......C...-

.....T.....

FO21

III

F

.....A....-

.....T.....

......C...-

.....T.....

LN20

III

I1

.....A....-

.....T.....

......C...-

.....T.....

269OV

III

I10

.....A....-

.....T.....

......C...-

.....T.....

M284/08

III

I10

.....A....-

.....T.....

......C...-

.....T.....

P465

III

I2

.....A....-

.....T.....

......C...-

.....T.....

Consensus

I

 

CCCGAGGAGAGGATCGCT-

ACTCGTGGGCGCGGTGTTGT

CCGGTCGACCGACCCGCGC-

CCAGCACATCTCGACGCTGT

Consensus

III

 

CCCGAGGAGAGGATCGCT-

ACTCGTGGGTGCGGTGTTGT

CCGGTCGACCGACCCGCGC-

CCAGCACATTTCGACGCTGT

K10

II

 

CCCGAGGAG C GGATCGCT-

ACTCGTGGG C GCGGTGTTGT

CCGGTCGACCGA T CCGCGC-

CCAGCACAT C TCGACGCTGT

  1. *K10 sequenced strain type II used as sequence reference.
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