Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosisstrains

Biet, Franck; Sevilla, Iker A; Cochard, Thierry; Lefrançois, Louise H; Garrido, Joseba M; Heron, Ian; Juste, Ramón A; McLuckie, Joyce; Thibault, Virginie C; Supply, Philip; Collins, Desmond M; Behr, Marcel A; Stevenson, Karen

doi:10.1186/1471-2180-12-264

Table 1 Synthesis of information and genotyping data of S strains of Map by subtype

From: Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosisstrains

Strain	Subtype	Origin		Profile				MIRU-VNTR Patterns⁵	SNP Gyr A & B	LSP⁶ A20 4		Pigmentation	Strains References
Strain	Subtype	Host	Country¹regions	RFLP²	PFGE³	MIRU-VNTR⁴		MIRU-VNTR Patterns⁵	SNP Gyr A & B	LSP⁶ A20 4		Pigmentation	Strains References
6756		Ovine	NZ	S1	nd	INMV	72	41331118	A/C C/C	-	+		[14]
6759		Ovine	NZ	S1	nd	INMV	72	41331118	A/C C/C	-	+		[14]
P133/79		Ovine	FO	S2	nd	INMV	70	71331118	A/C C/C	-	+		[15]
21P		Ovine	FO	S2	[9]	INMV	70	71331118	A/C C/C	-	+	+	[8]
235 G	I	Ovine	UK, Shetland	S2	[75–8]	INMV	70	71331118	A/C C/C	-	+	+	[8]
M189		Ovine	UK, Scotland	S2	[7]	INMV	21	51331118	A/C C/C	-	+	+	[8]
M15/04		Ovine	UK, Scotland	S2	[nd-70]	INMV	70	71331118	A/C C/C	-	+	+	[8]
M254/04		Ovine	UK, Scotland	S2	nd	INMV	32	61331118	A/C C/C	-	+	+	This study
M71/03		Ovine	UK, Scotland	S2	[80–71]	INMV	70	71331118	A/C C/C	-	+	+	This study
M72/03		Ovine	UK, Scotland	S2	[77–70]	INMV	70	71331118	A/C C/C	-	+	+	This study
22 G		Ovine	ES, Basque	A	[69–50]	INMV	84	91331118	A/T C/T	-	+		[16]
OVICAP16		Caprine	ES, Andalucia	A	[65–61]	INMV	85	(11)1331118	A/T C/T	-	+		[16]
OVICAP49		Ovine	ES, Navarra	A	[57–57]	INMV	70	71331118	A/T C/T	-	+	+	This study
21I		Ovine	ES, Basque	B	[61–47]	INMV	70	71331118	A/T C/T	-	+		[16]
PCR311		Caprine	ES, Balearic	B	[16–47]	INMV	70	71331118	A/T C/T	-	+		[16]
19I		Ovine	ES, Basque	C	[79–55]	INMV	70	71331118	A/T C/T	-	+		[16]
85/14	III	Ovine	CA	C	nd	INMV	27	81331118	A/T C/T	-	+		[14]
OVICAP34		Ovine	ES, Basque	D	[66–62]	INMV	21	51331118	A/T C/T	-	+		This study
18I		Ovine	ES, Basque	E	[67–51]	INMV	84	91331118	A/T C/T	-	+		[16]
FO21		Ovine	ES, Aragon	F	[56–56]	INMV	84	91331118	A/T C/T	-	+	+	This study
LN20		Porcine	CA	I1	nd	INMV	71	51131118	A/T C/T	-	+		[14]
269OV		Ovine	ES, Basque	I10	[69–54]	INMV	72	41331118	A/T C/T	-	+		[16]
M284/08		Ovine	ES, Basque	I10	[71–64]	INMV	72	41331118	A/T C/T	-	+		[16]
P465		Ovine	IS	I2	nd	INMV	73	20331118	A/T C/T	-	+		This study

¹ Country and regions: ES, Spain; CA, Canada; UK, United Kingdom; FO, Faroe Island; IS, Iceland; NZ, New Zealand.
² nd, not determined; alphanumeric nomenclature as defined by Pavlik et al., 1999 [17], alphabetic nomenclature correspond to new profiles identified in this study.
³ Nomenclature as defined by Stevenson et al., 2002 [8].
⁴ Nomenclature as defined by Thibault et al., 2007 [11].
⁵ Number of repeats at locus 292-X3-25-47-3-7-10-32 defined by Thibault et al., 2007 [11].
⁶ +, presence; -, absence.

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ISSN: 1471-2180

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