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Table 1 Synthesis of information and genotyping data of S strains of Map by subtype

From: Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosisstrains

Strain Subtype Origin Profile MIRU-VNTR Patterns5 SNP Gyr A & B LSP6 A20 4 Pigmentation Strains References
Host Country1regions RFLP2 PFGE3 MIRU-VNTR4
6756   Ovine NZ S1 nd INMV 72 41331118 A/C C/C - +   [14]
6759   Ovine NZ S1 nd INMV 72 41331118 A/C C/C - +   [14]
P133/79   Ovine FO S2 nd INMV 70 71331118 A/C C/C - +   [15]
21P   Ovine FO S2 [9] INMV 70 71331118 A/C C/C - + + [8]
235 G I Ovine UK, Shetland S2 [75–8] INMV 70 71331118 A/C C/C - + + [8]
M189   Ovine UK, Scotland S2 [7] INMV 21 51331118 A/C C/C - + + [8]
M15/04   Ovine UK, Scotland S2 [nd-70] INMV 70 71331118 A/C C/C - + + [8]
M254/04   Ovine UK, Scotland S2 nd INMV 32 61331118 A/C C/C - + + This study
M71/03   Ovine UK, Scotland S2 [80–71] INMV 70 71331118 A/C C/C - + + This study
M72/03   Ovine UK, Scotland S2 [77–70] INMV 70 71331118 A/C C/C - + + This study
22 G   Ovine ES, Basque A [69–50] INMV 84 91331118 A/T C/T - +   [16]
OVICAP16   Caprine ES, Andalucia A [65–61] INMV 85 (11)1331118 A/T C/T - +   [16]
OVICAP49   Ovine ES, Navarra A [57–57] INMV 70 71331118 A/T C/T - + + This study
21I   Ovine ES, Basque B [61–47] INMV 70 71331118 A/T C/T - +   [16]
PCR311   Caprine ES, Balearic B [16–47] INMV 70 71331118 A/T C/T - +   [16]
19I   Ovine ES, Basque C [79–55] INMV 70 71331118 A/T C/T - +   [16]
85/14 III Ovine CA C nd INMV 27 81331118 A/T C/T - +   [14]
OVICAP34   Ovine ES, Basque D [66–62] INMV 21 51331118 A/T C/T - +   This study
18I   Ovine ES, Basque E [67–51] INMV 84 91331118 A/T C/T - +   [16]
FO21   Ovine ES, Aragon F [56–56] INMV 84 91331118 A/T C/T - + + This study
LN20   Porcine CA I1 nd INMV 71 51131118 A/T C/T - +   [14]
269OV   Ovine ES, Basque I10 [69–54] INMV 72 41331118 A/T C/T - +   [16]
M284/08   Ovine ES, Basque I10 [71–64] INMV 72 41331118 A/T C/T - +   [16]
P465   Ovine IS I2 nd INMV 73 20331118 A/T C/T - +   This study
  1. 1 Country and regions: ES, Spain; CA, Canada; UK, United Kingdom; FO, Faroe Island; IS, Iceland; NZ, New Zealand.
  2. 2 nd, not determined; alphanumeric nomenclature as defined by Pavlik et al., 1999 [17], alphabetic nomenclature correspond to new profiles identified in this study.
  3. 3 Nomenclature as defined by Stevenson et al., 2002 [8].
  4. 4 Nomenclature as defined by Thibault et al., 2007 [11].
  5. 5 Number of repeats at locus 292-X3-25-47-3-7-10-32 defined by Thibault et al., 2007 [11].
  6. 6 +, presence; -, absence.