|
Marker name
|
DI*
|
95% CI †
|
Marker set by author
|
|---|
|
This paper
|
Koeck 2008 [[19]]
|
Pichon 2010 [[26]]
|
Elberse 2011 [[25]]
|
|---|
| | | |
(A)
| |
(B)
|
(C)
|
|---|
|
ms15_507bp_45bp_7U
|
0.607
|
[0.588-0.626]
| | | |
+
|
|
ms17_167bp_45bp_3U
|
0.852
|
[0.847-0.857]
|
+
|
+
|
+
| |
|
ms19_663pb_60pb_10U
|
0.674
|
[0.658-0.691]
|
+
|
+
|
+
| |
|
ms25_426bp_45bp_4U
|
0.788
|
[0.779-0.797]
|
+
|
+
|
+
|
+
|
|
ms26_492bp_51bp_6U
|
0.714
|
[0.703-0.726]
| | | | |
|
ms27_326bp_45bp_3U
|
0.561
|
[0.543-0.579]
|
+
| | | |
|
ms31_594bp_45bp_9U
|
0.695
|
[0.683-0.708]
| | | | |
|
ms32_280pb_45bp_2U
|
0.598
|
[0.585-0.611]
| | | |
+
|
|
ms33_407bp_45bp_2U
|
0.737
|
[0.725-0.748]
|
+
|
+
| |
+
|
|
ms34_239bp_45bp_1U
|
0.682
|
[0.670-0.695]
| | |
+
| |
|
ms35_349bp_49bp_4U
|
0.572
|
[0.557-0.587]
| | | | |
|
ms36_274pb_45pb_2U
|
0.793
|
[0.786-0.801]
| | |
+
| |
|
ms37_501bp_45bp_7U
|
0.855
|
[0.851-0.859]
|
+
|
+
|
+
|
+
|
|
ms38_309bp_45bp_2U
|
0.557
|
[0.535-0.578]
| | | |
+
|
|
ms39_275bp_45bp_2U
|
0.812
|
[0.804-0.819]
|
+
| |
+
| |
|
ms40_376bp_45bp_3U
|
0.789
|
[0.782-0.797]
| |
+
| |
+
|
|
ms41_166pb_14pb_2U
|
0.567
|
[0.548-0.586]
| |
+
| | |
|
All markers
|
0.989
|
[0.987-0.991]
| | | | |
|
Congruence (%)
| | |
47.2
|
59
|
65.1
|
43.8
|
- The marker name contains all the numbers necessary to characterize the marker in reference to a given sequenced genome (reference strain, R6). For example, in “ms15_507bp_45bp_7U”, - ms means minisatellite, - 507 bp is the size of the amplification product of this marker; - 45 bp is the size of the repeat unit, - 7 is the number of repeats. Markers used by authors are noticed by a cross (+), authors seven Markers set are noticed as following: (A) this paper, (B) Pichon’s and (C) Elberse’s. The MLST/MLVA congruence in percent by author is indicated at the bottom of the table.
- * DI: diversity index. † CI: confidence interval.
