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Table 1 Primers used for Real-Time PCR

From: Changes in human gut flora with age: an Indian familial study

Target organism

Primer

Sequence

PCR product (bp)

Clostridium coccoides-Eubacteria rectale group

ClEubF

CGGTACCTGACTAAGAAGC

429 [47]

 

ClEubR

AGTTTYATTCTTGCGAACG

 

Prevotella

PrevF

CACCAAGGCGACGATCA

283 [19]

 

PrevR

GGATAACGCCYGGACCT

 

Lactobacillus group

LacF

AGCAGTAGGGAATCTTCC

341 [48]

 

LacR

ACACCGCTACACATGGAG

 

Bacteroides-Prevotella group

BacF

GAAGGTCCCCCACATTG

410 [49]

 

BacR

CAATCGGAGTTCTTCGTG

 

Bifidobacterium

BifF

GCGTGCTTAACACATGCAAGTC

126 [50]

 

BifR

CACCCGTTTCCAGGAGCTATT

 

Roseburia

RosF

TACTGCATTGGAAACTGTCG

230 [19]

 

RosR

CGGCACCGAAGAGCAAT

 

All bacteria

27F

TCCTACGGGAGGCAGCAGT

316 [This study]

 

343R

GACTACCAGGGTATCTAATCCTGTT

 
  1. Legend: ClEub- Clostridium coccoides-Eubacteria rectale group specific primers, Prev- Prevotella genus specific primers, Lac- Lactobacillus genus specific primers, Bac-Prev- Bacteriodes-Prevotella specific primers, Bif- Bifidobacterium genus specific primers , Ros- Roseburia genus specific primers and All bacteria- universal primers for all bacteria.